Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0179 ATGGCGAGGAGAGAGAGAGGTTTGTCTGCATCTGCGGCGGATGGAGGTGGTGGAAAAGCGGCGGAATTGAAGGAGAAGCTGAGGGGGCTGGTGAAGGCCATCTTGGAGGACGACGACTACACCACGCGCCACGCTGAAGACGCCATCGCCACTCTATCGACTCTTAGGGATTTGAAGAGAGCATCGCCCTCATCCTTCTATGATTTCAGCTTCCCCGTTCCTCCTGAATTTCGATGCCCCATTTCCACCGAGTTGATGACGGATCCTGTTATCTTGGCCACCGGACAGACTTATGATCGGGCATACATTCAGAGGTGGTTGGATGAAGGGCATAGAACATGCCCTCAAACCCAACAAGTCCTTTCTCACACTAATCTTACTCCAAATTACTTGGTCCGGGACATGATTGCGCAGTGGTGTAAAGAGCATGCAATTGAGATGCCAAAGCCGGTTCAGGACATCAACCAAGTAGTAAGTAATGCGGATAGAGACCACTTGGATTCATTACTTCATAAGCTGTCATTGTCTGTCTCTGATCAGAAAGAAGCTGCAAGAGAGCTTCGCCTCCTAACAAAGAGAATGCCTTCCTTTAGAACCCTCTTTGGGGAGTCGGTTGATGTGATTCCACAGTTGCTCAGTCCATTATCGCCTAATACGGCTCATGTTCACCCCGATCTCCATGAGGACTTGATTACAACTATTCTAAATCTCTCGATTCAAGACGATAATAAGAAAGTATTTGGAGAGGATCCAACTGTCATTGCTCTTCTCATTGATGCCTTGAAATCCGGAACAATTCAAACAAGGAGCAATGCCGCAGCAGCCATTTTCACATTATCGGCTCTTGACTCCAACAAGCACATCATTGGAAAGTCTGGAGCCATCAAACATTTGCTTGACCTTTTAGAGGAGGGACAGCCATTAGCCGTGAAAGATGCTGCCTCAGCTATATTCAACCTATGTCTTGTGCACGAGAATAAAGGGAGGACCGTGAGAGAAGGTGCAGTCCGGGTCATTCTGAAGAAGATCATGGACCACATTCTAGTTGATGAGTTGCTCGCTATATTGGCACTCCTTTCCAGCCATCCCAAGGCCATTGAAGAAATGGGGGATCTTGGAGCTGTAGCTTTCTTGCTGGCTATCATAAGGGAGGGCACGTCAGAGCGAACCAAGGAGAATTGTGTTGCAATTTTATATACAATCTGTTACGGTGATAGAACAAAGTTGAAGGAAGTTAGAGAAGAAGAAAAAGCCAACGGTACCCTGTCTAAACTTGCACGACACGGGACTTCAAGGGCAAAAAGGAAGGCTAATGGAATTCTTGAGAGGCTCAATCGATCACCCTGCTTAACACACACTGCTTAA 1365 0.4718 MARRERGLSASAADGGGGKAAELKEKLRGLVKAILEDDDYTTRHAEDAIATLSTLRDLKRASPSSFYDFSFPVPPEFRCPISTELMTDPVILATGQTYDRAYIQRWLDEGHRTCPQTQQVLSHTNLTPNYLVRDMIAQWCKEHAIEMPKPVQDINQVVSNADRDHLDSLLHKLSLSVSDQKEAARELRLLTKRMPSFRTLFGESVDVIPQLLSPLSPNTAHVHPDLHEDLITTILNLSIQDDNKKVFGEDPTVIALLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLDLLEEGQPLAVKDAASAIFNLCLVHENKGRTVREGAVRVILKKIMDHILVDELLAILALLSSHPKAIEEMGDLGAVAFLLAIIREGTSERTKENCVAILYTICYGDRTKLKEVREEEKANGTLSKLARHGTSRAKRKANGILERLNRSPCLTHTA* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0179 454 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Amo06g0179 454 CDD RING-Ubox_PUB 77 119 IPR045210 -
Amo06g0179 454 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Amo06g0179 454 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 18 452 - -
Amo06g0179 454 Gene3D - 348 448 IPR011989 -
Amo06g0179 454 SUPERFAMILY ARM repeat 174 444 IPR016024 -
Amo06g0179 454 Pfam Armadillo/beta-catenin-like repeat 285 321 IPR000225 GO:0005515
Amo06g0179 454 Pfam U-box domain 73 144 IPR003613 GO:0004842|GO:0016567
Amo06g0179 454 SUPERFAMILY RING/U-box 64 150 - -
Amo06g0179 454 SMART arm_5 362 403 IPR000225 GO:0005515
Amo06g0179 454 SMART arm_5 240 281 IPR000225 GO:0005515
Amo06g0179 454 SMART arm_5 282 322 IPR000225 GO:0005515
Amo06g0179 454 PANTHER U BOX DOMAIN-CONTAINING 18 452 - -
Amo06g0179 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 146 IPR013083 -
Amo06g0179 454 Gene3D - 203 347 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0179 Amo-Chr6 2824000 2826514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0179 135 454 U-box Gene Family AT3G07360 58.359 1.15e-125 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0179 - - gmx:100806619 651.744