Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0163 ATGTTGAAGCTGTCTCGCCTTCTACCTTCCATTTCCGGTTCCAGCCCCCGCTTACTGGAACCCCTCTCCTTTACAAAACATGATCCTAGGGATTCAGCAGCGTTTTCTACAGCTACCAATAATAAATATGCTGCTAAAGGATATACCTCAAATCGCATATTTGCTCCTTATTCCGTTTACAAGGGCAAAGCTGCTTTCTCTTTGAGTCCTTGTCTTCCAACTTTCACCAAGTTGGATAGTGGGGCCGTTGTAGTTGATCGCCGTGGTTCAATGATGATGATTTTCATGCACTCCATTGGGGAGCGCAAGTATGACTGGGAGAACAAGCAGAGATTTGCTCTCTCGGCGACTGAAGTTGGCTCTTTGATAAGCATGGGCCCTCAGGATTCTTGTGAATTCTTTCATGACCCCTCCATGTTATCGAGTAATGCTGGTCAAGTGAGAAAAAGCTTATCAATTAAGCCTCATGCAAGCAGCAATGGCTACTTCGTGTCTTTGACTGTTGTCAATAACCTGCTAAATACCAAGGATTACTTGAGTGTCCCTGTCACGACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATCATGGGTTGGGACCGCATGACTCATCAGTCAGGGGGCACGGTTGGTCTTCAATCGAAAGTGGAACCACCTGCTTTGGACTTGGAATGGGATAAGTAA 702 0.4601 MLKLSRLLPSISGSSPRLLEPLSFTKHDPRDSAAFSTATNNKYAAKGYTSNRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGAVVVDRRGSMMMIFMHSIGERKYDWENKQRFALSATEVGSLISMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPHASSNGYFVSLTVVNNLLNTKDYLSVPVTTAEFAVMKTACSFALPHIMGWDRMTHQSGGTVGLQSKVEPPALDLEWDK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0163 233 SUPERFAMILY ssDNA-binding transcriptional regulator domain 50 212 IPR009044 GO:0003677|GO:0006355
Amo06g0163 233 Pfam Whirly transcription factor 59 193 IPR013742 GO:0003697|GO:0006355|GO:0006952
Amo06g0163 233 Gene3D Transcriptional Coactivator Pc4; Chain A 43 213 IPR009044 GO:0003677|GO:0006355
Amo06g0163 233 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 27 233 IPR013742 GO:0003697|GO:0006355|GO:0006952
Amo06g0163 233 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 27 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0163 Amo-Chr6 2521381 2524038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0163 34 233 Whirly Transcription Factor Family AT1G71260 61.321 5.00e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Amo06g0163 Whirly 1.2e-54 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0163 - - var:108343725 345.895