Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0156 ATGGAAAGAGGAGTGTGTCCTATCCTGTTGTTGGTACTGGTTTTTTCTCTTGTGCTCTCTGTTTATGCTATGGATGTTGAGTTTGGACCCTGCCATAATTGTGATGATGAGGAAGGGATTTGGACCATCCAGAGCATCCTGGTTTGCCAAAAAGTCAGTGACTTCTTCATTGCCATTGCATATTTTTCCATACCCCTTGAGCTACTTTACTTCATTAGCTACTCCAATGTCCCATTCAAATTGGTCTTCCTTCAGTTCATTGCCTTCATTGTTCTCTGTGGATTGACACATTTGCTCAATGCCTACACCTATTATGGCTCTCCCTCCTTCCAGCTTTTGATCTCTCTAACCGTCGCAAAATTCCTTACTGCTCTTGTGTCCTGTGCTACTGCAATCACCTTTCCTACTCTCATTCCCCTTCTTCTCAAGATCAAAGTGAGAGAGCTTTTCTTGAGGCAGAATGTGTTGGAACTGGGCCAAGAGGTTGGGATGATGAAGAAACAGAAGGAAGCGAGCTGGCATGTTCGAATGCTGACTCGCGAAATTAGGAAGTCTCTGGATAAGCACACTATCTTGTATTCCACCCTTGTTGAGCTTTCCAAGGCCTTGGATCTGCATAACTGTGCTGTGTGGATGCCCGACAATGACAGGCGAGAGATGCATTTGACCCATGAATTGAAACCGAGTTCGGCTAATAAATTAAAAATTTCTATTCCTATAAGTGATCCAGATGTGTTGGAGATAAGAAAGAGTAAGGGTGTGCAGATTTTGAGGCCTGATTCTGCATTGGGAGCTGCTAGTGGTGGTGAATCTGGGGAGTCGGGTTCTGTAGCAGCTATCCGCATGCCGATACTTCATGTTTCTAATTTCAAAGGAGGGACACCGGAAATGGTTGATACATCTTATGCTATACTGGTTTTGGTTCTCCCAAATTTAAACTCAAGGGCTTGGAACCCCCATGAGATGGATATAGTAGAAGTAGTTGCTGATCAGGTTGCTGTAGCCTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTGATGAGGCAGAAACTTGCAGAGCAAAACCGAGCGCTGCAACAGGCTCAAAAGAATGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTCAGAAAGTCATGAGTAATGGAATGCGAAGGCCTATGCATTCAATCCTTGGTTTGCTTTCAATATTTCAAGAGGACAATCTAAGACCTGAACAGAAGATTATTATTGACACAATGTTGAGAGTTAGCAATGCACTTTCCAGTTTGATTAGTGATGTAATGGAGATTTCGGCAAATGACAAAGGAAGCTTTCGGTTAGAGATGAAACCTTTCGATCTGCATTCCATGACGAGGGAAGTTTCTTGCATTGCTAAGTGTTTGTGTGTACATAAAGGCTTTGGTCTTGAAATTGATGTCCACAAGGGTTTACCAGGGTTGGTTATAGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTGCACTTGATAGGTTATCTGTTGAACATGTATGACAAAGGGACTCTCATTTTTCGAGCATTTCCTGAAAATGATAGTGGAAATAAGGATGATAAAGGTCTTGGAATATGGAGATCAAGTGTGCAACATGACTATGTATATGTAAAATTTAGTTTTCGGGTAACGGGCATTACTTCCGAGTCAGATGTATTAAATTCAGCAAAACATTATTCTGATAGAAGGCACTACAACAATGAACCTAATGAGGGCCTGAGCTTCAGCATGTGCAAAACACTGGTGCAGATGATGCAAGGTAATATCTGGATGTCGCCAAACTCGTCGGGTTTGGCTCAAGGCATGACACTTCTTCTCAAGTTTCAGCTAGGTCGACCCTCGGTTGGAAGATCCACATTTGCACTAAAAGATGCTCCAAACCCTCAGTTTAGAGGCCTTAAGGTTGTGTTGGCGGACGACGATAATGTAAACAGGACCGTGACAAAGAAGCTGCTCGAGAAGCTTGGTTGTCAAGTAACCGCTGTTTCATCAGGTTTCCAGTGCCTCAGTGCTGTAAGCGCCTCCGGCAACACGTACAAAATTATCCTCTTAGATCTTCACATGCCTGAAATGGATGGCTTCGAAGTAGCTAGAAGGATCCGAAAGTTCCATAGCCGTAGTTGGCCCATGATTATAGCTCTTACCGCGAGCGCGGAAGATGATGTGAGGGAGAAATGCATACAGGTGGGAATGCATGGATTGATTCGCAAACCAATTCTTCTTCAAGAGATGGCTGATGAACTCAGGACAGTGTTGCAACGTGCAGGCTTTTTTTCACAAGGTATACAGAACCAGTTGTCACCATGGAACAAAAATAGATGA 2334 0.4357 MERGVCPILLLVLVFSLVLSVYAMDVEFGPCHNCDDEEGIWTIQSILVCQKVSDFFIAIAYFSIPLELLYFISYSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGSPSFQLLISLTVAKFLTALVSCATAITFPTLIPLLLKIKVRELFLRQNVLELGQEVGMMKKQKEASWHVRMLTREIRKSLDKHTILYSTLVELSKALDLHNCAVWMPDNDRREMHLTHELKPSSANKLKISIPISDPDVLEIRKSKGVQILRPDSALGAASGGESGESGSVAAIRMPILHVSNFKGGTPEMVDTSYAILVLVLPNLNSRAWNPHEMDIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQQAQKNAMMASQARSSFQKVMSNGMRRPMHSILGLLSIFQEDNLRPEQKIIIDTMLRVSNALSSLISDVMEISANDKGSFRLEMKPFDLHSMTREVSCIAKCLCVHKGFGLEIDVHKGLPGLVIGDEARSFQVILHLIGYLLNMYDKGTLIFRAFPENDSGNKDDKGLGIWRSSVQHDYVYVKFSFRVTGITSESDVLNSAKHYSDRRHYNNEPNEGLSFSMCKTLVQMMQGNIWMSPNSSGLAQGMTLLLKFQLGRPSVGRSTFALKDAPNPQFRGLKVVLADDDNVNRTVTKKLLEKLGCQVTAVSSGFQCLSAVSASGNTYKIILLDLHMPEMDGFEVARRIRKFHSRSWPMIIALTASAEDDVREKCIQVGMHGLIRKPILLQEMADELRTVLQRAGFFSQGIQNQLSPWNKNR* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0156 777 ProSiteProfiles Histidine kinase domain profile. 379 616 IPR005467 -
Amo06g0156 777 Pfam Response regulator receiver domain 639 751 IPR001789 GO:0000160
Amo06g0156 777 Gene3D - 165 337 IPR029016 -
Amo06g0156 777 Gene3D - 338 435 - -
Amo06g0156 777 PIRSF Ethylen_sen_hybr_HK 5 762 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Amo06g0156 777 ProSiteProfiles Response regulatory domain profile. 638 756 IPR001789 GO:0000160
Amo06g0156 777 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Amo06g0156 777 Gene3D - 637 772 - -
Amo06g0156 777 SMART REC_2 637 752 IPR001789 GO:0000160
Amo06g0156 777 PANTHER ETHYLENE RECEPTOR 8 757 - -
Amo06g0156 777 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 441 598 IPR036890 -
Amo06g0156 777 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Amo06g0156 777 Gene3D - 436 616 IPR036890 -
Amo06g0156 777 CDD REC_ETR-like 637 752 - -
Amo06g0156 777 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 357 437 IPR036097 GO:0000155|GO:0007165
Amo06g0156 777 SUPERFAMILY GAF domain-like 190 339 - -
Amo06g0156 777 Coils Coil 342 372 - -
Amo06g0156 777 PANTHER TWO-COMPONENT HISTIDINE KINASE 8 757 - -
Amo06g0156 777 Pfam GAF domain 189 336 IPR003018 GO:0005515
Amo06g0156 777 SMART gaf_1 187 346 IPR003018 GO:0005515
Amo06g0156 777 CDD HATPase_ETR2_ERS2-EIN4-like 478 610 - -
Amo06g0156 777 SUPERFAMILY CheY-like 633 758 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0156 Amo-Chr6 2422933 2427399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0156 25 759 Miscellaneous Gene Families AT3G04580 60.481 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo06g0156 GAF 9e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0156 K14509 - gmx:100805023 1171.38