Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0150 ATGCTTCTATGCGAGGTTCTTGCACAGGGAAGTGGCGGTGATGCAGCGGAAAACTCCTCCATCGAAGAGGTGAACTCAACCATGGCGGCGCTGCAGCCACAACAAGCATCTTACAGAGGGGTAAGAAGGAGGCCATGGGGAAAGTACGCGGCAGAGATAAGGGACTCTACGAGGAACGGCGAGAGGGTATGGTTGGGAACCTTTGATACGGCGGAGGAAGCTGCTTTGGCTTACGACCAAGCGGCATTGGCAAGTAGAGGATCAGTGGCGATTTTGAACTTCCCGGCAGGGATGGTTGTTGAGTCGCTAGAGAAGATGATGATGGAGTGTGGTGGGTTTAGTGAAGGTTGTTCTCCGGTGTTGGAGCTGAAGAAGAAGCATTCCATGAAGAGGAAGATGGAGAACAGGGAGAAGAAACTGCTCATGATGATGAATACAAATAATAACAACAATCATCATAATCATAATCATGTCATGGATGGGGGATCCGGGTGGGGCAAAGCAGTTGTTACGCTCCCGGTTTTGAAAGGTGGCACACAGCCAAATGATGACTATATATATGCAGTATGCTTAGTGATGTCAATTATCGTTGAATGTCTTCACTCAATAAAGTAA 615 0.4813 MLLCEVLAQGSGGDAAENSSIEEVNSTMAALQPQQASYRGVRRRPWGKYAAEIRDSTRNGERVWLGTFDTAEEAALAYDQAALASRGSVAILNFPAGMVVESLEKMMMECGGFSEGCSPVLELKKKHSMKRKMENREKKLLMMMNTNNNNNHHNHNHVMDGGSGWGKAVVTLPVLKGGTQPNDDYIYAVCLVMSIIVECLHSIK* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0150 204 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Amo06g0150 204 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Amo06g0150 204 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Amo06g0150 204 ProSiteProfiles AP2/ERF domain profile. 37 95 IPR001471 GO:0003700|GO:0006355
Amo06g0150 204 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Amo06g0150 204 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Amo06g0150 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 17 140 - -
Amo06g0150 204 PANTHER DNA-BINDING DOMAIN 17 140 IPR044808 GO:0003700|GO:0009873
Amo06g0150 204 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Amo06g0150 204 SMART rav1_2 37 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0150 Amo-Chr6 2356520 2358284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0150 35 139 AP2-EREBP Transcription Factor Family AT3G23240 66.667 2.19e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo06g0150 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0150 K14516 - qsu:112003251 155.992