Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0142 AACAGAACAAATGCTAAAGGAATATCTAATAATGTGTACTTATTAGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACCTGAGGCCAGATATTAAAAGAGGGAAATTCAGCAAAGAAGAGGAAGAGGCCATTCTCAAACTTCATGCAATTCTTGGAAATAGGTGGTCGGCGATTGCAGCAAGATTACCGGGTCGTACAGATAATGAAATAAAGAACTTTTGGCACACTCATTTGAAGAAAAGGATTGAGAAAAGTGAAGTGCACAATAATGGCATCAGTGGTAGTAAATATTCCTCACAAATCATCACCATGCCAAGAGTAGTAGCAGCAATTGCACCAAGTAGTGGTAGTGCTGCTTCTAGCTTCAATGATGGTTTATCCTCAACCTCAAGGAATAGATCAAGTTCATCACCAAATATTATTGCAGGACCAGGATTTTGCAGTGCAATAACATCCTCTTCAGGTGAAACCATGGGAAATCATAACGATGGTTCCATTCAGCTCAGTGAAGAGATGGAATTTTGGTTCCACAATACATGGAGTACCAGGGCCAAGCTTTTCTGTTCTGCTGCTTCTGCAGCTGGAGCTGGAAGTTCCAGCTCCAATCCTGACGGTGACTTCAACCCTTACGAGGTTCTAGGTGTTAGTCCTATTGAAAGATTTGACATGATCAAGGCTGCATATGCGAAAAAGAAGAAGGAGGCTGAGATTAACGGCGACGAAGCTACTGCTTCCCGGTTGGAGAAGGCATATGACAAACTCATGATGGCTCAGTTGACTAATCGGAAAAAGGGTGTGACTTTTGGATCATTTAAGGTTTCGAAGGACATCAAGTATGCTGACAAGCAGCCAATTATACCTTGGGGGCCAAGGTTTGCTAAATCAACTACAAATGATACACGCATCAACTTGGCAATATCTGCTGTTTTCACAGCTTGGATCCTTGTTAGGCGGAGTGCTGAATATAAACCTTTGCAATTTTTAGCATTTGCTTTTGTTTATAGGCTATTTGAGAAGTTAAAATCATTTGAATCTCCTGCAACCCGAACATATAATGAAGAAGGTGAGGATACCGGAGAAGGCCTGCGTATGGGAAAACGATTGCTTCGATCTCTGGCATTGGTGTTTGGTTGTGTAGCTTTGTCATCTGTGGGATACACTATCTTTTTGAACATAATTGAGTATGCAGGTGGTTTTATTCCCGCTGCCCTTTACAACAGCCAGGAGTTGATAATCACCACTTCATCGGCGGTAATGCTTTATATTTTGGCAACTTATTATAGATAG 1302 0.414 NRTNAKGISNNVYLLGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEEAILKLHAILGNRWSAIAARLPGRTDNEIKNFWHTHLKKRIEKSEVHNNGISGSKYSSQIITMPRVVAAIAPSSGSAASSFNDGLSSTSRNRSSSSPNIIAGPGFCSAITSSSGETMGNHNDGSIQLSEEMEFWFHNTWSTRAKLFCSAASAAGAGSSSSNPDGDFNPYEVLGVSPIERFDMIKAAYAKKKKEAEINGDEATASRLEKAYDKLMMAQLTNRKKGVTFGSFKVSKDIKYADKQPIIPWGPRFAKSTTNDTRINLAISAVFTAWILVRRSAEYKPLQFLAFAFVYRLFEKLKSFESPATRTYNEEGEDTGEGLRMGKRLLRSLALVFGCVALSSVGYTIFLNIIEYAGGFIPAALYNSQELIITTSSAVMLYILATYYR* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0142 433 Pfam Myb-like DNA-binding domain 38 83 IPR001005 -
Amo06g0142 433 PANTHER CHLOROPLAST J-LIKE DOMAIN 1 178 433 - -
Amo06g0142 433 Coils Coil 235 255 - -
Amo06g0142 433 CDD SANT 40 83 IPR001005 -
Amo06g0142 433 SUPERFAMILY Homeodomain-like 19 91 IPR009057 -
Amo06g0142 433 Gene3D - 39 105 - -
Amo06g0142 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 87 IPR017930 -
Amo06g0142 433 Pfam Protein CHAPERONE-LIKE PROTEIN OF POR1-like 234 342 IPR021788 -
Amo06g0142 433 PANTHER - 178 433 IPR021788 -
Amo06g0142 433 Gene3D - 5 37 - -
Amo06g0142 433 SMART sant 37 85 IPR001005 -
Amo06g0142 433 ProSiteProfiles Myb-like domain profile. 33 83 IPR001005 -
Amo06g0142 433 SUPERFAMILY Chaperone J-domain 158 259 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0142 Amo-Chr6 2259674 2264158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0142 14 181 MYB Transcription Factor Family AT1G06180 43.784 1.27e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo06g0142 CPP1-like 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0142 - - var:108343807 416.387