Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0137 ATGTCAAATAACAGCACAAGTGGTGGTAAGAAGAGAAAACTCTGTCCACCAAAAGAACCTGAAGATTGGTGCTTTGAATGCAAGGATGGTGGAGAAGTCATTGTATGCGATCGCAGGAACTGTGTGAAGGTTTATCACACCGACTGTGTTCCTGTTACTCCTAGGAAGGACAAATCTTGGATTTGTGCTTGGCATTATTGCTATGAATGCAAGGAGTCCGCAAAGTTTTATTGCCTTGGTTGTCCAAATGCTTTGTGCAAAGAGTGCTTGCCTTCCTCAGAATTTATCACTGTCAAGGGTGATAAAGGATTATGCTGCGACTGCGCGCCGCTAGTCAAAATTATAGAACAAAATTTGGAGCGGGACTCTCAGGGGAACAAGATAAGAGTGGATGGAAGAGATACATATGAGGGTCTATTCAAGGAATACTGGGAAATTATTAAGCTAAACGAAGGATTAACTAGTGATGATATCTCTGCTGCAGAAACCAACTACAACAAAAAGGTTAAAAAATCTCCAGATCAAAGCAAAGTCACTGATGTAGATAAAGAAAGTCAGAATGACTCCATGTCATCGGACGGCGATGAAGTTTTTACATATAAACACAACTCAACCAAAAGGAAGCAGTCCAGTTCACTGGAGTTTATGGGATGGGGATCGAAACCTCTCCTTAGCTTCCTTGCGTCCATTGGAAAATTTAGTACTGAACCATTGTCACAGTGGGGTATACGGACTCTCGTGTGTGAATACATTGAGAAGAACAATCTCTATCTCTCGCAAGATAAGAGGAAGTTCCTCCTTGATGAAATGCTGTTTTCTATATTCAGAAAAAAGGTTATGTTGAAAAATCAAATATATCCTCTATTGGAATTTCACTTTGCTGAAAAGTCGGGTGATACAGATGGTGAAGAAGACAATTATGAAAGCATAAGCACTCCTCCAGACAACAAGGGTCTCAGTGATCAGACTTCATGTAGGGAAAGGAGTTTGTCAAGCTCGAAAGGGAAACTTCTATTGGAAAAGAAGGATTTGTCTATCAAGCCTAGTCGTTTTGCATCCATAAGTTCCAGTAATATAAGACTTATTTACTTAAGACAAAGCTTGGTGCTAGAGTTATGTAAACAACTTGAAAGTGCTATGGAAAAGGTTGTTGGAGCCTTCGTTAGAGTTAAAATGGATTCCAGTGATTGTAAGCAGACAAGGCCTTACCATCTTGTGAGAGTTAAAGGTGTTGTATTGGAGGATGATGCTTATAGGAGAATGCTTTTGGTAGTTTCCTTCATGTCTGAAGCCATCCCTATCTCCGAGCTTTCTGATAATGACTTCACAGAGCAAGAATGTGAGGATTTGCGGCTAAAAGTGAAAGCCAAAATGCTGCAGAAACTAACTGTTGTGGAGCTTCAAGAAAAGGCAAACATTCTTCATGAGGATATAACAAAGCATTGGATCGCGACTCGACTAACCTATTTGCAAAATCAAATTGACCGTGCAAACCTGAAGGGAAGACAAAGAGAAAAATTTGCCTTACTAGATGAAAGGGAAAAACTTCAACAACCATGGAAGCAAGAAGAGTTGTTAAAGCGAGTTCCATCAGTTGTCCCAGAGTTTCCTACAAAGCCACACAAATGA 1629 0.4021 MSNNSTSGGKKRKLCPPKEPEDWCFECKDGGEVIVCDRRNCVKVYHTDCVPVTPRKDKSWICAWHYCYECKESAKFYCLGCPNALCKECLPSSEFITVKGDKGLCCDCAPLVKIIEQNLERDSQGNKIRVDGRDTYEGLFKEYWEIIKLNEGLTSDDISAAETNYNKKVKKSPDQSKVTDVDKESQNDSMSSDGDEVFTYKHNSTKRKQSSSLEFMGWGSKPLLSFLASIGKFSTEPLSQWGIRTLVCEYIEKNNLYLSQDKRKFLLDEMLFSIFRKKVMLKNQIYPLLEFHFAEKSGDTDGEEDNYESISTPPDNKGLSDQTSCRERSLSSSKGKLLLEKKDLSIKPSRFASISSSNIRLIYLRQSLVLELCKQLESAMEKVVGAFVRVKMDSSDCKQTRPYHLVRVKGVVLEDDAYRRMLLVVSFMSEAIPISELSDNDFTEQECEDLRLKVKAKMLQKLTVVELQEKANILHEDITKHWIATRLTYLQNQIDRANLKGRQREKFALLDEREKLQQPWKQEELLKRVPSVVPEFPTKPHK* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0137 542 MobiDBLite consensus disorder prediction 300 325 - -
Amo06g0137 542 MobiDBLite consensus disorder prediction 309 325 - -
Amo06g0137 542 SMART rtf1 353 456 IPR004343 GO:0003677
Amo06g0137 542 Pfam Plus-3 domain 358 453 IPR004343 GO:0003677
Amo06g0137 542 ProSiteProfiles Plus3 domain profile. 353 479 IPR004343 GO:0003677
Amo06g0137 542 MobiDBLite consensus disorder prediction 166 196 - -
Amo06g0137 542 Pfam SWIB/MDM2 domain 223 292 IPR003121 -
Amo06g0137 542 PANTHER ZINC ION BINDING / DNA BINDING PROTEIN 12 535 - -
Amo06g0137 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 112 IPR013083 -
Amo06g0137 542 SUPERFAMILY FYVE/PHD zinc finger 19 71 IPR011011 -
Amo06g0137 542 SMART PHD_3 23 66 IPR001965 -
Amo06g0137 542 SUPERFAMILY Plus3-like 355 477 IPR036128 GO:0003677
Amo06g0137 542 Gene3D - 354 476 IPR036128 GO:0003677
Amo06g0137 542 Gene3D SWIB/MDM2 domain 204 302 IPR036885 -
Amo06g0137 542 PANTHER OS01G0884500 PROTEIN 12 535 IPR045894 -
Amo06g0137 542 MobiDBLite consensus disorder prediction 166 190 - -
Amo06g0137 542 ProSiteProfiles SWIB/MDM2 domain profile. 212 295 IPR003121 -
Amo06g0137 542 SUPERFAMILY SWIB/MDM2 domain 206 295 IPR036885 -
Amo06g0137 542 CDD PHD5_NSD 23 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0137 Amo-Chr6 2208691 2212923 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0137 21 90 PHD Transcription Factor Family AT3G14980 33.333 5.19e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Amo06g0137 Plus-3 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0137 - - adu:107492011 908.286