Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0109 ATGGATCATCAAGGGCATGGCCAAAACCCATCCATGGGGGTTGTCAGTAGTGGGGCTCAACTAACGTATGGTTCCAATCCGTACCAGCCAAACCAAATGACTGGGGCACCAGGGTCAGTTGTTACATCGGTTGGGAACATGCAAAGCGGTCAACCTGCTGGAGCTCAACTGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAACTTCAGCAACAACTACAGGCTTTTTGGGCAAATCAATACCAAGAAATTGAGAAGGTAACCGATTTCAAGAACCACAGTCTCCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCGGCTGAGGCACCTGTCATATTTGCAAGGGCATGCGAAATGTTCATTTTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGAAGAACCCTTCAGAAAAATGATATTGCTGCTGCAATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTAGCATCGATCCCAAGAGGAACAATGCCTGTTGCAGGGCCAGCTGATGCAATGCCTTACTGTTATATGCCGCCTCAACATGCACCTCAAGTTGGACCTGCAGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTACGCTCAGCAATCTCATCCCTACATGGCTCCACAAATGTGGCCGCAGCCACCAGACCAACGACAATCATCTCCGGATCATTAG 780 0.4679 MDHQGHGQNPSMGVVSSGAQLTYGSNPYQPNQMTGAPGSVVTSVGNMQSGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADAMPYCYMPPQHAPQVGPAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQSSPDH* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0109 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 259 - -
Amo06g0109 259 Gene3D Histone, subunit A 62 178 IPR009072 GO:0046982
Amo06g0109 259 SUPERFAMILY Histone-fold 69 172 IPR009072 GO:0046982
Amo06g0109 259 MobiDBLite consensus disorder prediction 1 37 - -
Amo06g0109 259 Pfam Core histone H2A/H2B/H3/H4 61 163 IPR007125 GO:0003677
Amo06g0109 259 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 259 - -
Amo06g0109 259 MobiDBLite consensus disorder prediction 9 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0109 Amo-Chr6 1120841 1123598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0109 1 246 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.158 2.31e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo06g0109 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0109 K08066 - gmx:100527803 426.017