Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0102 ATGACGAAGGACAAAAACGACCAAACCACCTCCAATTTCTGCTTTCTTTTCATTTTCTTCTTCCTTCTCTCCGTTCCGTCAACGTTTGCGCAGAACCAAAATGCCGCTTCTGACAATAACAACAACTACAACACGCAGTTCAGCCCTTCGCTCGCGATAATCGTCGTCATTCTCGTTGCAGCACTCTTCCTCATGGGATTCTTCTCCATCTACATCCGCCACTGCGCCGATTCACCCTCCGGCACCGTCCTTCCAACCACGGGAGGCGGGAGGTCCAGAAGAGGGGCACGTGGTCTCGATCCTGCAGTCATCGAGACTTTCCCGATTCTGGAGTATTCGGAGGTCAAGATCCACAAGATTGGAAAAGAGGTTCTTGAATGTGCGGTGTGCCTGTGTGAATTCGAAGACACCGAAACGCTGCGTTTGATTCCCAAGTGTGACCATGTGTTCCATCCGGAGTGCATCGACGAGTGGCTAGCCTCCCACACAACCTGCCCCGTCTGCCGCGCCAACCTCGTCCCGCAACCCGGCGAGTCAGTCCATGCGGTTCCACTCGTGCCAACCACCGACGTCGAGGCGCAAAACGACGCCGTCGTTGACACCGCAGTGCCGGAGGTGCGTGTCAACGTGGCGGATGCTGAAGGAGGAGTCGCGGCGTCGTCGGAGCCGGAAGTGATTGCGATTCCGAAAAGCTTGACGCTGAATCGGAACAGGACGACGCGCGGTTCCAACCGGAGGAGGCAGTTCCCTCGGTCGCACTCGACCGGGCATTCTCTGGTCCAACCGGGAGAGAACACGGACCGGTTCACTTTGAGATTGCCTGTGGCCGTTAGAAGAGAGATAATAAACCGGGAGTTGCAACGGTCTAACAGCTTGTTGGTTTTGCCTAGGGACGGTAGTTCGAGACAGGGAAGTAGTAGGGGAAGGACTTTGAGGCGGTTGGACCGGAGTTTCAAATCCGACCGGTGGGTTTTGACGATGGCGCCACCGTTCTTGGTCAGAGGATCTTCGGTTAGGTCGCCGAAGGTGGTTGATAGCACCGGCGGGGCAGGGGCGTCGTCGTCTACAGCCCCTATTTTGCCGCCGTCGGCCGTTGACTCTGCTCGACCTCCGTAA 1116 0.5663 MTKDKNDQTTSNFCFLFIFFFLLSVPSTFAQNQNAASDNNNNYNTQFSPSLAIIVVILVAALFLMGFFSIYIRHCADSPSGTVLPTTGGGRSRRGARGLDPAVIETFPILEYSEVKIHKIGKEVLECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGESVHAVPLVPTTDVEAQNDAVVDTAVPEVRVNVADAEGGVAASSEPEVIAIPKSLTLNRNRTTRGSNRRRQFPRSHSTGHSLVQPGENTDRFTLRLPVAVRREIINRELQRSNSLLVLPRDGSSRQGSSRGRTLRRLDRSFKSDRWVLTMAPPFLVRGSSVRSPKVVDSTGGAGASSSTAPILPPSAVDSARPP* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0102 371 SUPERFAMILY RING/U-box 126 176 - -
Amo06g0102 371 SMART ring_2 127 168 IPR001841 -
Amo06g0102 371 Pfam Ring finger domain 126 169 IPR001841 -
Amo06g0102 371 PANTHER RING FINGER DOMAIN-CONTAINING 15 316 - -
Amo06g0102 371 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 15 316 - -
Amo06g0102 371 MobiDBLite consensus disorder prediction 335 371 - -
Amo06g0102 371 CDD RING-H2_EL5_like 126 169 - -
Amo06g0102 371 MobiDBLite consensus disorder prediction 340 361 - -
Amo06g0102 371 MobiDBLite consensus disorder prediction 238 265 - -
Amo06g0102 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 174 IPR013083 -
Amo06g0102 371 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0102 Amo-Chr6 1068576 1070628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0102 16 348 Rapid Response to Elicitors AT3G05200 46.779 3.43e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0102 K10664 - gmx:100781706 409.068