Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0096 ATGCCTCCACCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAACATTGTGGAAAAATTCAAGCTACAGTCAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGTACAAGTTTATAGAATGGCATATTTTAGTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCATTGGACTTTTAACTTCAGTTGGAGAAGAGAAAGAATATGCAAGAGAGGGAAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGTGGAGCAGCCTGTTGTAGTTATTCAACTTGCAAAAGTCAAGTTCTTTCGGGGTCAAGTAGGTCTTCAAAATGTGATGTATGCGACACAAATGTTATTTAATCCTGATATTCCTGAAGTTGTTGAATTCAGGCAGAGTATGATTGAGCAAGGTGTCAGTGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTCTCTCCTTGGAAGATGATTTCATGCGTCTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATTTTTGGAGCAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCCTATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTCACTCCAAGATTTAAAATTAAAGTAACAGTTGAAGATCATACTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCTTCCTATTTGCTTAAGAAATCATGTGCTGATTTGTTTACTGAAGTTCAAAGAGATGCAAGTGTTATATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTGCTGCTCAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGGACTTTCCGAGTTAGGAGAATTTGTGATGATTCCACCATCATTGCGATGTTTGAACTTCCCAATTATGATGCTGATGATGAGTCTTCTCCAAAAAAGGAGCATGATTTACACAAATCTGTTCCTGCTGGAAAAGCTGATGTTGGTATTAAGAAGGAGTCTTCTGATAGTTTTATCAAAACTGAGAAAGATGCTGGTGATTGTGCTGGGATTTTGTGTAAATCCCCAGTTCTTATAGATTTTTTGGCTGAAAAACAGCCTGTTATTTCTGTGGGGACTGAATTTGTTGGCTTAATTGATGGTGAGCATGGAAAGGAAGAGAAAACTCCCAGCAATGATACTCTTAGTGATGATCTTTCTGCTGAAATCGATATATTGCTTAGCTCAACGGAAAAAGAAACTCAGGAGCTGTTGTCCCATGTTCTTGAAGCACCTTCCCAAAATGGAGAGAAGCTTACCCATGAAAATCATGTTGTGACCTCCAAGAGTAAGAGAAATTTGAATCCTCAGTTTGAAGAGGTTGCTGTTGATGCAGATGGGCGTGGGTTGAAGGTTGCTAAGGTTAATGGAGTTTGA 1818 0.3878 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHEVPNSMEMILLDEHCGKIQATVKKPLLNRFRDHIVEVQVYRMAYFSVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSELLNMTQDYDFLVDVIGLLTSVGEEKEYAREGKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVEFRQSMIEQGVSGTQPLFIANEGKVLSLEDDFMRLTRKCTIEELQDNNQEGSFIIFGAIQGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKVTVEDHTGEGIFLLFDREASYLLKKSCADLFTEVQRDASVICGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDSTIIAMFELPNYDADDESSPKKEHDLHKSVPAGKADVGIKKESSDSFIKTEKDAGDCAGILCKSPVLIDFLAEKQPVISVGTEFVGLIDGEHGKEEKTPSNDTLSDDLSAEIDILLSSTEKETQELLSHVLEAPSQNGEKLTHENHVVTSKSKRNLNPQFEEVAVDADGRGLKVAKVNGV* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0096 605 Gene3D - 114 250 IPR012340 -
Amo06g0096 605 CDD RPA1_DBD_A_like 19 107 - -
Amo06g0096 605 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Amo06g0096 605 SUPERFAMILY Nucleic acid-binding proteins 274 425 IPR012340 -
Amo06g0096 605 Gene3D - 266 430 IPR012340 -
Amo06g0096 605 Pfam Replication factor-A C terminal domain 293 378 IPR013955 -
Amo06g0096 605 Pfam Domain of unknown function DUF223 43 134 IPR003871 -
Amo06g0096 605 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Amo06g0096 605 CDD RPA1_DBD_B_like 140 243 - -
Amo06g0096 605 CDD RPA1_DBD_C 277 420 IPR013955 -
Amo06g0096 605 Gene3D - 4 112 IPR012340 -
Amo06g0096 605 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 372 - -
Amo06g0096 605 PANTHER REPLICATION FACTOR A 1, RFA1 22 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0096 Amo-Chr6 1005971 1008848 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0096 11 371 Core DNA Replication Machinery Family AT5G08020 25.000 2.67e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0096 - - adu:107471135 1099.35