Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0095 ATGTCTATGCAAAGGTTGGAAGGAAAGGTGGCAATTGTGACCGGTGGAGCGAGTGGAATCGGAGCAGAAACAGTGAAGCTATTTGCCAAACACGGAGCATGCGTGGTTATAGCAGATATTCAAGATGACCTCGGTAAACAGGTTGCAACTTCCATTGGTACAGACAAGGTGAGTTACCGCCACTGCGACGTTAGAGACGAGAAACAAGTTGAAGAAACCGTAGCTTTCACCGTAGAAAAATACGGTGGCCTAGACATCATGTTCAGCAACGCCGGAGTTGCAGGTTCTCAAAGTAACGTCCTTGATATGGATTTGAATGATTTTGACAACACGATTGCAGTTAATCTGCGTGGATATGCAGTGTGCATMAAGCACGCTGCACGTGTCATGGTTGCAAGAAAGACACGTGGCTCCATAATATGCACCGCGAGTACGGTTGCAACGGTTTCTGTTGGAGGTTTTGATGGTAAGGGTTACGTTGCATCCAAGAGTGGTATTTTGGGGCTTGTGCGTTCAACTTGTGGTGACCTTGGAGAATTTGGGATTAGGGTTAATTCAATTTCACCCTATCTTGTAGCTACCCCACTCGCAACTAGAGTTCTGAATATGGATGCTAGTGAAGTTGAAGAGATTGCTGTTGCTGGTGCAAATTTGAAGGGGATTGTGTTGAGGCCGATCCATATTGCTCAAGCGGCTTTGTTTCTTGCTTCTGATGAATCTGCTTATATCAGTGGGCACGACATGGTCGTTGATGGAGGTTTCGTGGGCAGTATTGCTGAAATAACTAGCAGGACGCCTTCAACTTTTGCTTCTGTCAACAAGAGTTTCTGA 831 0.4585 MSMQRLEGKVAIVTGGASGIGAETVKLFAKHGACVVIADIQDDLGKQVATSIGTDKVSYRHCDVRDEKQVEETVAFTVEKYGGLDIMFSNAGVAGSQSNVLDMDLNDFDNTIAVNLRGYAVCIKHAARVMVARKTRGSIICTASTVATVSVGGFDGKGYVASKSGILGLVRSTCGDLGEFGIRVNSISPYLVATPLATRVLNMDASEVEEIAVAGANLKGIVLRPIHIAQAALFLASDESAYISGHDMVVDGGFVGSIAEITSRTPSTFASVNKSF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0095 276 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 146 174 IPR020904 GO:0016491
Amo06g0095 276 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Amo06g0095 276 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 IPR002347 -
Amo06g0095 276 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Amo06g0095 276 Gene3D - 1 265 - -
Amo06g0095 276 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 255 - -
Amo06g0095 276 PRINTS Glucose/ribitol dehydrogenase family signature 159 178 IPR002347 -
Amo06g0095 276 PRINTS Glucose/ribitol dehydrogenase family signature 218 238 IPR002347 -
Amo06g0095 276 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Amo06g0095 276 PRINTS Glucose/ribitol dehydrogenase family signature 180 197 IPR002347 -
Amo06g0095 276 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Amo06g0095 276 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Amo06g0095 276 PANTHER OXIDOREDUCTASE-RELATED 1 255 - -
Amo06g0095 276 Pfam Enoyl-(Acyl carrier protein) reductase 15 254 - -
Amo06g0095 276 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 254 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0095 Amo-Chr6 995278 997709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0095 6 253 Acyl Lipid Metabolism Gene Families AT3G55290 29.811 3.19e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0095 - - gmx:100798299 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0532 16 8710532 8714229 Amo06g0095 06 995278 997709 hybridization