Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0085 ATGAGTTGTTTCAGCTGTTGTGAAGGCGATGACTTGCACAATACTACTGATAGTGGAGCGCCGTTTGCTGTGAAAAATTCAGCAGGAAACGATGGAAATCATCATGCTTCAGAAACTGCAAAGCAGGGTGCTCAAACTGTTAAAGTTCAGCCCATTGAAGTTCCTGCTATACCAGTGGATGAACTAAAAGAAATTACAGATAACTTTGGGGAAAATGCTCTGATTGGAGAGGGTTCCTATGGAAGAGTATATCATGGTGTTCTTAAAAGTGGGCAGACTGCCGCAATAAAGAAGTTAGATGCCAGTAAACAGCCTGACGATGAATTTTTAGCCCAGGTTTCAATGGTTTCACGGTTGAAGCATGACAATTTTGTTCAATTGCTTGGTTATTGTGTTGATGGAAACTCCCGTGTTCTTGCTTATGAGTATGCATCTAATGGGTCTCTGCATGATATTCTACACGGCAGAAAAGGTGTTAAAGGAGCAAAACCTGGTCCTGTTTTGACCTGGGCACAGAGAGTTAAAATTGCTGTAGGGGCTGCAAAAGGGCTTGAGTACTTGCATGAGAAGGCTGATCCTCACATTATCCACCGGGATATCAAGTCAAGCAATGTTCTAATATTTGATGATGATGTTGCAAAAATTGCAGATTTTGATTTGTCAAATCAGGCCCCTGACATGGCAGCACGTCTTCATTCCACTCGTGTCCTTGGAACCTTCGGTTATCATGCACCAGAATATGCAATGACTGGGCAATTGAATGCTAAGAGTGATGTATACAGTTTTGGTGTTGTCCTTCTGGAGCTTTTGACAGGAAGAAAACCCGTTGATCATACATTACCACGTGGGCAGCAGAGCCTAGTTACTTGGGCTACTCCAAAACTCAGTGAGGATAAAGTCAGGCAGTGTGTAGATGCAAGACTAGGAGGAGAATACCCCCCCAAAGCTGTTGCTAAGTTGGCTGCTGTTGCTGCATTGTGTGTGCAATACGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTGCAACCTTTGTTGAATGCACGACCTGGCCCTGCTGGTGAAACACCAAACTAA 1086 0.4365 MSCFSCCEGDDLHNTTDSGAPFAVKNSAGNDGNHHASETAKQGAQTVKVQPIEVPAIPVDELKEITDNFGENALIGEGSYGRVYHGVLKSGQTAAIKKLDASKQPDDEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRVLAYEYASNGSLHDILHGRKGVKGAKPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGEYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGPAGETPN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0085 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Amo06g0085 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0085 361 PIRSF ILK 20 352 - -
Amo06g0085 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Amo06g0085 361 CDD STKc_IRAK 75 348 - -
Amo06g0085 361 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
Amo06g0085 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Amo06g0085 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Amo06g0085 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0085 361 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Amo06g0085 361 SUPERFAMILY Protein kinase-like (PK-like) 48 345 IPR011009 -
Amo06g0085 361 Gene3D Phosphorylase Kinase; domain 1 29 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0085 Amo-Chr6 862471 866515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0085 48 352 Receptor kinase-like Gene Family AT3G58690 48.065 7.67e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Amo06g0085 PK_Tyr_Ser-Thr 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0085 K13436 - tcc:18613791 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0085 06 862471 866515 Amo19g1277 19 25593499 25597124 PCT
Amo19g1277 19 25593499 25597124 Amo06g0085 06 862471 866515 PCT