Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0075 ATGGGCCGTGAGAACGGTTACAAACGTGATGATGAGACAAGTTCATCAGAGAACCAAAAAGAAACAGTTCCATACTTCAAGCTGTTCTCGTTTGCAGATTCCACTGACATCTTGTTGATGATTGTTGGGACCATTGCCGCCATTGGAAATGGTATGGGAATGCCTCTCATGACATTAATATTTGGCCAAATGGCAAACGTCTTCGCTGATAACCTGTACAGTGAAGATATTGTCAACCAAGTTTCCAAGATCAGTCTGAAATTTGTGTACTTGGCAATAGGCATAGGTGTTGCAGCATTCCTTCAGGTGGTATGTTGGATGGTGACAGGGGAAAGACAAGCTGCAAGAATAAGGGGTTTGTACTTGAAGACTATTCTAAGACAAGATATTGCTTTCTTTGATAAAGAGACAAACACTGGTGAGGTCATAGGTAGAATGTCAGGTGACACAGTCCTTATTCAAGATGCCATGGGTGAGAAGGTTGGGAAATTTGTGCAGTTAATTGCAACATTTGTTGGAGGGTATGTGATATCATTTGTCAGAGGGTGGCTTCTAACTCTTGTCTTGTTGTCTGCTCTTCCAATTCTCGCTATAGCTGGCGCAGCTTTGGCCATCACCATAGAAAAGATGGCAACCATAGGTCAAAATGCTTATGAAAAAGCAGCACATGTAGTTGAACAGACAATAGGTTCTATAAGAACAGTTGCATCCTTCACTGGGGAAAAGCAAGCAGTATCTAGTTATGAAAAACGTCTTGAAGATGCATACAAATCAGGAGTTAGCGAAGGCATAGCAGCTGGAATGGGTTTTGGCGTTGTTACCTGTGTCATTTTTTGCGGTTATGCTTTGGCTGTATGGTATGGTTCAAAGATGATAATGGAAAAAGGATATAATGGGGGTATGGTGGTCAATGTCATGGTTGCTGCGTTAAGTGCTTCCATGTCTCTTGGGGAAGCAAGTCCTTGCTTAAGTGCTTTTGCTTCGGGTAAAGCAGCAGCCTATAAAATGTTTCAAACAATTGAGAGAAAGCCTGAGATTGATGCTTATGATCCTACTGGAAAAACATTGGAAGATATTCATGGCGATATAGAGTTGAGGGATGTCTATTTCAGTTATCCGGCCAGACCCGAGGAGCTGATATTCAACGGATTCTCTCTGCATATTCCAAGTGGCACAACTGCGGCTTTAGTAGGACAAAGTGGAAGTGGGAAGTCCACAGTTATCAGTTTGATGGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCATTAACATTAGAGAATTTCAGGTTAGATGGATAAGAGGAAAAGTTGGCCTTGTCAGCCAGGAGCCAGTGTTGTTTGCATCTAGCATCAAGGATAACATTGCTTATGGAAAGGAGGGAGCAACAATCGAAGAGATTAAAGTTGCAACTGAACTTGCAAATGCTGCTAATTTCATTGATAAACTGCCAAAGGGATTGGAAACAATGGTTGGTGAGCATGGAACACAACTATCTGGTGGACAGAAGCAACGCATTGCCATTGCAAGAGCTATCCTAAAAGATCCAAGGATTTTGCTTCTAGATGAAGCCACAAGTGCACTTGATGCAGAATCTGAAAGAATAGTGCAAGAGGCCCTAGACAGGATCATGATCAACAGAACTACTGTTATTGTAGCTCATCGCCTAAGCACTGTGAAGAATGCAGACATGATTGCTGTAATTCATAGAGGGAAAATGGTTGAGAAAGGAACACATGTTGAATTAGTCAAGGACCCCGAAGGAGCTTACTCTCAGCTAATACGTTTACAAGAGGTAAGAGAGGAGGATTCATTAAAGAATGCAGACAATCAAAACAAGTCTGAACTCTCAAAAAGTAAAAGGTGGTCATTTCAAAGATCAGAATCATCTGTTGGTAGCAGTTGCCGCCACTCGACTTCCTTCGGCTTACCTACAGGAGCTAATATCCTTGATCCTAAAGTTGAAACTCCAAGAGAAGAGGATGTACCATCACAAGAGGTTCCACTATGGTGGCTTTTTTCCCTTAACAAACCAGAGATTCCAGTGCTTCTTATGGGATCTATAGCTGCCACAGCAAATGGTGCTATATGGCCAGTGTTTGGTTTGTTGCTTTCTAGTGCCATCAAAACATTTTATGAACCATTCAATGAGTTAAAGAAGGACTCAAGGTTTTGGGCACTAATGTTTGTGACCCTTGGACTTGCATCTTTAATTGCTCTTATAGCAAGAGGATACTTTTTCTTGTTGCTATGTTTTGAGAAGGTGATCAACATGGAGGTTTCATGGTTTGATGAGGCTGATCATTCGAGTGGCGCAATCGGTTCAAGGCTCTCGACGGATGCTACATCTGTTCGTGCCCTTGTTGGGGATGCATTAGGACTACTAGTTCAAAATATTGCAACAGCATGTACAGGCTTGATCATTGCTTTCGTTGCAAGCTGGCAATTGGCGTTGATCATTGTTGTCATAGCCCCTCTTGTTGGATTGAATGGATATGTTCAAATGAAGTTCTTGAAAGGCTTCAGTTCAGATGCAAAGCGGATGTATGAGGAAGCGAGCCAGGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTGGCATCTTTCTGCGCTGAAGAGAAAGTTATGGAATTCTATAAGAAGAAATGTGAAGGTCCAAGGAAAACAGGAATAAGGCAAGGCTTGATTAGTGGAATAGGATTCGGGGTTTCATTTTTTCTTCTCTATTGCGTCTATGCAACCTGTTTCTATGCTGGAGCTAGATTTGTGAAGGATGGCAAGGCATCATTCTCAGATGTTTTAAGGGTTTTCTTTGCTTTAACTATGGCAGCTAACGCAATTTCCCAATCAAGCTCACTTGCACCTGATTCTAGCAAAGCCAAGTCAGCTGCTGCTTCCATATTTGGACTTCTTGATATGAAGTCAAAGATAGATCCAAGTGATGAGTCTGGGACAACACTGGATAATGTAAATGGTGAAATTAAGTTTCGCCATGTAGGCTTTAAGTATCCATCTAGACCGGATATACAGATTTTTCGAGACCTAAGTTTGACCATCCATTCTGGCAAAACAGTGGCCCTTGTTGGTGAGAGTGGAAGCGGGAAATCCACAGTGATTGCTTTGTTACAAAGATTCTTCGATCCAGATTTTGGTCAAATCACACTTGATGGGATAGAAATTCAGAAATTGCAGCTCAAGTGGTTGAGGCAGCAGATAGGGCTTGTAGGTCAAGAGCCAGTATTATTCAATGACACCATTCGTGCCAACATTGCATATGGTAAAGGAGGCAATGCAACTGAAGCAGAAATCATACAAGTAGCAGAACTGGCCAATGCTCATGGCTTTATTAGTGCCTTACAACAGGGTTATGATACTGTGGTGGGAGAGAGGGGAATACAGTTATCTGGTGGGCAGAAGCAACGTGTAGCCATTGCACGTGCTATAATAAAGAGTCCAAAGATATTGCTACTTGATGAGGCCACAAGTGCATTGGATGCAGAGTCGGAGAGAGTTGTTCAAGATGCATTAGACAAAGTGATTGTGAATAGAAGCACTGTGGTTGTGGCACATCGTCTATCCACAATTAAAAATGCAGATGTCATTGCTGTAGTTAAAGATGGAGTTATTGTGGAAAAAGGAAGGCATGAGACCCTAATTAGCATGGAGGATGGTTTTTATGCTTCCTTGGTCCAACTTCATTATAGTGCGTCAACAGCATGA 3732 0.4204 MGRENGYKRDDETSSSENQKETVPYFKLFSFADSTDILLMIVGTIAAIGNGMGMPLMTLIFGQMANVFADNLYSEDIVNQVSKISLKFVYLAIGIGVAAFLQVVCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFVQLIATFVGGYVISFVRGWLLTLVLLSALPILAIAGAALAITIEKMATIGQNAYEKAAHVVEQTIGSIRTVASFTGEKQAVSSYEKRLEDAYKSGVSEGIAAGMGFGVVTCVIFCGYALAVWYGSKMIMEKGYNGGMVVNVMVAALSASMSLGEASPCLSAFASGKAAAYKMFQTIERKPEIDAYDPTGKTLEDIHGDIELRDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLMERFYDPQAGEVLIDGINIREFQVRWIRGKVGLVSQEPVLFASSIKDNIAYGKEGATIEEIKVATELANAANFIDKLPKGLETMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTVKNADMIAVIHRGKMVEKGTHVELVKDPEGAYSQLIRLQEVREEDSLKNADNQNKSELSKSKRWSFQRSESSVGSSCRHSTSFGLPTGANILDPKVETPREEDVPSQEVPLWWLFSLNKPEIPVLLMGSIAATANGAIWPVFGLLLSSAIKTFYEPFNELKKDSRFWALMFVTLGLASLIALIARGYFFLLLCFEKVINMEVSWFDEADHSSGAIGSRLSTDATSVRALVGDALGLLVQNIATACTGLIIAFVASWQLALIIVVIAPLVGLNGYVQMKFLKGFSSDAKRMYEEASQVANDAVGSIRTVASFCAEEKVMEFYKKKCEGPRKTGIRQGLISGIGFGVSFFLLYCVYATCFYAGARFVKDGKASFSDVLRVFFALTMAANAISQSSSLAPDSSKAKSAAASIFGLLDMKSKIDPSDESGTTLDNVNGEIKFRHVGFKYPSRPDIQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFFDPDFGQITLDGIEIQKLQLKWLRQQIGLVGQEPVLFNDTIRANIAYGKGGNATEAEIIQVAELANAHGFISALQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVIVNRSTVVVAHRLSTIKNADVIAVVKDGVIVEKGRHETLISMEDGFYASLVQLHYSASTA* 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0075 1243 Pfam ABC transporter 1017 1166 IPR003439 GO:0005524
Amo06g0075 1243 Gene3D ABC transporter type 1, transmembrane domain 86 972 IPR036640 GO:0005524|GO:0016021
Amo06g0075 1243 SUPERFAMILY ABC transporter transmembrane region 27 347 IPR036640 GO:0005524|GO:0016021
Amo06g0075 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 601 IPR027417 -
Amo06g0075 1243 SMART AAA_5 1025 1218 IPR003593 -
Amo06g0075 1243 SMART AAA_5 390 582 IPR003593 -
Amo06g0075 1243 Gene3D - 988 1242 IPR027417 -
Amo06g0075 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 998 1235 IPR003439 GO:0005524
Amo06g0075 1243 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 11 1239 - -
Amo06g0075 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 688 963 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0075 1243 PANTHER - 11 1239 - -
Amo06g0075 1243 CDD ABC_MTABC3_MDL1_MDL2 998 1236 - -
Amo06g0075 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Amo06g0075 1243 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Amo06g0075 1243 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Amo06g0075 1243 SUPERFAMILY ABC transporter transmembrane region 674 982 IPR036640 GO:0005524|GO:0016021
Amo06g0075 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0075 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1236 IPR027417 -
Amo06g0075 1243 Pfam ABC transporter transmembrane region 688 946 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0075 1243 Pfam ABC transporter transmembrane region 40 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0075 1243 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 336 - -
Amo06g0075 1243 Pfam ABC transporter 382 530 IPR003439 GO:0005524
Amo06g0075 1243 CDD ABC_6TM_Pgp_ABCB1_D2_like 677 981 - -
Amo06g0075 1243 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524
Amo06g0075 1243 Gene3D - 361 619 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0075 Amo-Chr6 786610 791379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0075 23 1237 Calmodulin-binding Proteins AT2G36910 43.800 0.0 1022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0075 K05658 - gmx:100800034 1879.37