Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0068 ATGGATAACCCACACCCCCGTGAATTGACTTTCTTACCCTCTAGGGACGTCAAAGAAGTGGATTTCTTCTCATCATCATCATCAACTGCTGCCGATCATCATCGTCATGGCACCACCACCAACAACGCTTCATCCTTCCCTCATCACCCTGTAAACACTGGGCTGAACTTAACGTGTGCAACTACTGGAATTTCAACTTCAAAGGGATCACCTAATGCCGAAAATACTGAATCCGAGAGGAAAATGGTGGAAGGTGAATTACGGAGACTGCAAGAAGAGAATAGAAAGCTGAGAAGTATGGTGGATCAGATCGCCAAAAGCTATAGCCAACTGCAGGCACAGCTCTTCATGGCTTTGCAGAAACAAAAGCTTACTCATCATCAGAATACTGGTGTCAAGAGCAATGGGATGATAAGTGGAGAAAAAGCTGTGGAGGGAGATGGAAGGGCGAAAGTAGAGATGAAGAATAACGATGCTTCGGTGTCTGGTGATGAAAAGAGAGAAAGAGAGGTATCAGCATCAAACAATAATGGTAATAATGCAGAGGAAGTAATGTCAAAGAAGCATGATGAGAATGATGATCATAATGAAGATGATGAAGATCGTTTGACTAAGCTTCATTTGGGAAAGCAAGTAGCAGCATCTGCTACAGAAGAAGACGTCCTTGAGCGATCTTCTTCTCAGAGTTGGGGATCATGCAAGACTCCCAACTTAGAAGAAACCAAGCTTCCTTCTTCTGACCTTCCTTTCAGGAAAGCCAGGGTTTCAGTGCGCGCAAGATCAGAAGCTCCTCTGATTAGCGATGGATGCCAGTGGAGGAAATACGGACAAAAAATGGCTAAAGGTAACCCCAGTCCTCGAGCCTACTATCGGTGCACCATGGCTGCTGGATGCCCAGTTCGGAAGCAGGTTCAAAGATGCGCAGAGGACAGTACAGTCCTAATAACAACCTATGAAGGTAACCACAACCACCCTCTTCCGCCGGCAGCCACCGCCATGGCAAACACGACTTCAGCCGCAGCAGCCATGCTACTATCAGGATCAACCTCATCATCGTCCAAAGAAACCCTAGCAACTTCAGCAGGATACTTCTCTTCATCAATGCCCTACACATCAATGGCGACGCTATCAGCTTCCGCGCCATTTCCCACCATCACTCTCGACCTCACACACAACCACCACAACGCACTCCAACTCCACCGTGTGGTCCCTCCTCCCGGTGTTACCTTCCCTCTCCCATTGCATGCAGTTACTCCTCCACATCAGCTTATAGCAGGGCACCCTTTCTTAATCTCTCACCACCAGAAGCTGATGCCTCCTTTGGTTCATCGACAACAACCACAGCCTTCCAATAATTCCCCGTCTATGGTGGAGACAGTGAGTGCAGCCATTGCTTCGGATCCAAACTTCACTGCGGCCGTGGCTGCGGCACTCTCATCAATCATTGGAAGCAGTAACAATGGTGGAAGTGCAAGTACCGTTATTCACCCTAATGCTATTTCTGTTTCACCGAATGGATCACCGCAACTTCCTCAGTCATGTACTACATACTCTACCAACTAG 1563 0.4773 MDNPHPRELTFLPSRDVKEVDFFSSSSSTAADHHRHGTTTNNASSFPHHPVNTGLNLTCATTGISTSKGSPNAENTESERKMVEGELRRLQEENRKLRSMVDQIAKSYSQLQAQLFMALQKQKLTHHQNTGVKSNGMISGEKAVEGDGRAKVEMKNNDASVSGDEKREREVSASNNNGNNAEEVMSKKHDENDDHNEDDEDRLTKLHLGKQVAASATEEDVLERSSSQSWGSCKTPNLEETKLPSSDLPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPSPRAYYRCTMAAGCPVRKQVQRCAEDSTVLITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSTSSSSKETLATSAGYFSSSMPYTSMATLSASAPFPTITLDLTHNHHNALQLHRVVPPPGVTFPLPLHAVTPPHQLIAGHPFLISHHQKLMPPLVHRQQPQPSNNSPSMVETVSAAIASDPNFTAAVAAALSSIIGSSNNGGSASTVIHPNAISVSPNGSPQLPQSCTTYSTN* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0068 520 MobiDBLite consensus disorder prediction 145 245 - -
Amo06g0068 520 SUPERFAMILY WRKY DNA-binding domain 259 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g0068 520 MobiDBLite consensus disorder prediction 145 172 - -
Amo06g0068 520 MobiDBLite consensus disorder prediction 183 207 - -
Amo06g0068 520 MobiDBLite consensus disorder prediction 220 242 - -
Amo06g0068 520 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 14 519 IPR044810 GO:0003700
Amo06g0068 520 MobiDBLite consensus disorder prediction 501 520 - -
Amo06g0068 520 MobiDBLite consensus disorder prediction 27 73 - -
Amo06g0068 520 Coils Coil 73 107 - -
Amo06g0068 520 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 14 519 - -
Amo06g0068 520 Gene3D WRKY domain 251 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g0068 520 SMART WRKY_cls 266 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g0068 520 ProSiteProfiles WRKY domain profile. 261 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g0068 520 MobiDBLite consensus disorder prediction 27 81 - -
Amo06g0068 520 Pfam WRKY DNA -binding domain 268 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0068 Amo-Chr6 731747 735047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0068 76 482 WRKY Transcription Factor Family AT4G04450 40.000 1.88e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo06g0068 WRKY 7.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0068 - - gmx:100783661 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0969 16 15612153 15615453 Amo06g0068 06 731747 735047 hybridization