Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0066 ATGGGAAGAAAAGCTGCTACTACTTGTTCCTCTTCCTCTAACATTTCTTCAACTGCTTCCTTGAATCTGAGGCTTGCACTCAGCACTCATGAAGAATGTGGTGGAAGCCTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATAGGGAGGAAGCTCAACATATTAGCACATAGAAGCTACCATGAGCTTGTTAAGAGACTTGAGAACATGTTCGACACTACCATTCTCTGGGGTACAGAGATGGATGAAGTTGTAGTTCAACCTGGTGAGAGATGCCATGTCCTCACTTATGAAGATGAAGAAGGAGATCTTGTTATGGTTGGGGATGTTCCTTGGGAGATGTTTGTTTCCACTGTAAAGAGGTTGAAGATCACAAGGGTAGACACATTCACTACCTCTTGA 402 0.4353 MGRKAATTCSSSSNISSTASLNLRLALSTHEECGGSLFVKVYMEGIPIGRKLNILAHRSYHELVKRLENMFDTTILWGTEMDEVVVQPGERCHVLTYEDEEGDLVMVGDVPWEMFVSTVKRLKITRVDTFTTS* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0066 133 ProSiteProfiles PB1 domain profile. 36 129 IPR000270 GO:0005515
Amo06g0066 133 Pfam AUX/IAA family 29 126 IPR033389 -
Amo06g0066 133 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 130 IPR003311 GO:0005634|GO:0006355
Amo06g0066 133 Gene3D - 31 133 - -
Amo06g0066 133 PANTHER AUXIN-INDUCED PROTEIN 35 130 - -
Amo06g0066 133 SUPERFAMILY CAD & PB1 domains 31 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0066 Amo-Chr6 710542 711389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0066 39 128 B3 DNA Binding Superfamily AT2G46530 35.556 3.46e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo06g0066 AUX_IAA 7.6e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0066 K14484 - gmx:100818376 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0066 06 710542 711389 Amo19g1316 19 26604465 26604870 PCT
Amo19g1316 19 26604465 26604870 Amo06g0066 06 710542 711389 PCT