Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0062 ATGAATCCATTAATGGGGGAGAATATGTTCAACTCCAGCCGCACAGGGATGACAAGAAGCTCCTCCTTGTTGCATGTGAATAAGGATATTGGTGAGCTGGTATGGGAAAATGGTGAAGTTAAAGTGCAAGGAAGAGGAGCAGCAGTGGAAGAAAGAGCAGCAAAGTTAGAGAGATTTTACTGCTCCTCAATTTTGGATCAAAGCAAGAAGCAGATCCAACAAGGATTTTCAAACTTCAAACTTACCTCCTTTTCACAACAGTGCAAGAAACCAAGAATAATAGATTTTTCAGGTTCAGCACAAGCAACAACAAAATCACACACACTACAGCACTTGGGTACTTGCAATAATAATAATAATCAGAGAACATCATTAGGAGGAGGAATGGTGAACTTCCCAAACTTCTTGGTTCCTTCACTCTTCCTCAACAAATCTTCTTCTGCTGCTGCTGCTGCCACTAGTAGTAAAGGTCATGATCATTCATCTGTGGTGATTGATTCTTCTAATAATAACAAAGCAGCAACACAAGAACTCAAAGAAACACCTTTTCATCAGGTACAACCACTTGATCAACACTCTCATGGTCAAAAACTATATCATGAAGCCTCATCAAGTTCAGCAGCACCACCACCACCTAATTATAATAGTAATAATAATATTGAACAACACTTGGTAGTAGCATCTTCCCCTGTAAGCTCTATTGGAGCCTCAAACGACCCTGACATTGGTATTATGAGGAAGCAGCATGAGGAATACAGCAACATCACTGATCATGATCATGATCATGATGACACCACAACATATATAAGTGATGATGTAAGTGAAGAAGCTGGAACAACCACCCTGTGGCCTATAGTATCTATAATACATTATTATCTATTCATGCAGGATGATGAAGAAACAGAAGATGTAATAATAGCAAAGGAAACACCAGCTGCAGGTACCAGAGCCAAGAGAAGCAGGGACCCAGAGGTTCATAATTTATCTGAAAGGGTCAACAAGAGGATTCATACATTGAAAGAACTCATACCCAATTGCAATAAGATTGATAAAGCTTCAACTCTTGATGATGCAATTGACTATCTTAAGACCCTGAAGCTTCAGTTGCAGATAATGTCAATGGGGAGAGGACTTTGCATGCCATTGATGATGTTACATAATCATCATAATCAGTTAATGTGTTATAGGCCATCATCAGGCACAGGCATTCCCCATCAAAACATGTTTGATGGTTTCTTCAACCAAATGAGGCCTATGATTATGCCACCATCACCACCTTTCATCAATCCCACTCCACCACTTGCGCCATTGTCAATCGCCAATTCTTCCGGTCTAGATGTCTCACATGTTCAAGCAATCAATAATGGTGATCAGGTTTCCCTTCACCAACACACAACTAGCAGCAGCTACCCCTTCTATTTTCCCACAATCATCAATCAGGAGGAAAAGAATAATTATGGAATGGAATAG 1470 0.4007 MNPLMGENMFNSSRTGMTRSSSLLHVNKDIGELVWENGEVKVQGRGAAVEERAAKLERFYCSSILDQSKKQIQQGFSNFKLTSFSQQCKKPRIIDFSGSAQATTKSHTLQHLGTCNNNNNQRTSLGGGMVNFPNFLVPSLFLNKSSSAAAAATSSKGHDHSSVVIDSSNNNKAATQELKETPFHQVQPLDQHSHGQKLYHEASSSSAAPPPPNYNSNNNIEQHLVVASSPVSSIGASNDPDIGIMRKQHEEYSNITDHDHDHDDTTTYISDDVSEEAGTTTLWPIVSIIHYYLFMQDDEETEDVIIAKETPAAGTRAKRSRDPEVHNLSERVNKRIHTLKELIPNCNKIDKASTLDDAIDYLKTLKLQLQIMSMGRGLCMPLMMLHNHHNQLMCYRPSSGTGIPHQNMFDGFFNQMRPMIMPPSPPFINPTPPLAPLSIANSSGLDVSHVQAINNGDQVSLHQHTTSSSYPFYFPTIINQEEKNNYGME* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0062 489 Gene3D - 313 366 IPR036638 GO:0046983
Amo06g0062 489 SMART finulus 327 371 IPR011598 GO:0046983
Amo06g0062 489 Pfam Helix-loop-helix DNA-binding domain 330 365 IPR011598 GO:0046983
Amo06g0062 489 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Amo06g0062 489 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 376 IPR036638 GO:0046983
Amo06g0062 489 MobiDBLite consensus disorder prediction 186 218 - -
Amo06g0062 489 PANTHER TRANSCRIPTION FACTOR PIF3 296 432 IPR044273 GO:0003700|GO:0006355
Amo06g0062 489 PANTHER TRANSCRIPTION FACTOR PIF3 5 266 IPR044273 GO:0003700|GO:0006355
Amo06g0062 489 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 296 432 - -
Amo06g0062 489 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0062 Amo-Chr6 674831 677111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0062 298 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 50.538 5.51e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo06g0062 HLH 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0062 K12126 - gmx:100804665 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0062 06 674831 677111 Amo19g1323 19 26744929 26747795 PCT
Amo19g1323 19 26744929 26747795 Amo06g0062 06 674831 677111 PCT