Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0055 ATGAGAATGAAGGTGTTTGTGATAGCCGCACTTGCTTTTGTGTCTCTAGTTTCCGTCATTGATGGATCTGAGCATCAGGCTCAGCTATCTGAGTTTGTAAACGATGCTTTATTCTCATCAGTTTCAAGCAAGCAGCTTTCCCAGCCACAACCTCTCATGGTTCCCATTACTGTTATCAATGGAGCTGCTGCCAAAGGAGCTGTATGTTTGGATGGAACATCGCCTGCCTATCACTTTCATCCTGGATCCGGATCAGGAGCCAATAGTTGGCTCATTCACTTAGAGGGAGGAGGATGGTGTAATACCATCAGAAATTGTGTTTTTAGGAAGACGACTCGGCGTGGTTCCTTTAAATTCATGGAAAAGACACTGCCATTCACGGGGATATTGAGCAATAAACCTGAAGAAAACCCTGATTTCTTTAACTGGAACAGAGTTAAAATTCGTTACTGTGATGGAGCATCTTTCGCCGGAGACAGTCAAAATGAGGCTAATCAGCTTCAATTTCGAGGACAAAAAATATGGCTAGCTGCAATCGAGGAATTAATGTCCAAAGGAATGCAAAAAGCCAACCAGGCACTTTTGTCTGGATGCTCTGCAGGTGGTCTAGCATCTATAATACATTGTGATGAATTCGGAAGCATGTTTCCAAAATCTACCAAAGTGAAATGTTTGAGTGATGCAGGATTTTTTCTTGATGCAGTTGATGTGTCTGGGGGGCACACACTGAGGAATATGTTTGGAGGTGTAGTTACATTACAGGAAGTACAAAAAAACTTACCAAAAAGTTGTCTCAACCAACTGGATCCAACTTCGTGCTTCTTTCCTCAAAACTTGATCCAGCATGTTCAAACTCCATTGTTTCTTCTCAATGCAGCTTATGATGCATGGCAGGTGCAAGAAAGTCTAGCCCCCCATTCAGCAGATCCAAGTGGTTCTTGGAATGATTGTAAAGCAAATCATGCAAGGTGTAACTCATCTCAAATACAGTTCTTCCAAGACTTCAGAAATCAACTGCTAAATGATGTGAAAGACTTCTCAAAGTCATCTCCAACTGGATTGTTCATAAATTCTTGTTTTGCTCACTGCCAGTCTGAGAGACAAGATACATGGTTTGCTGATGACTCTCCGCTTATTAACGACATGCCTGTGGCGATTGCTGTTGGAGACTGGTTTTTTGATCGAAAAACTATCAAAGCTATTGATTGTGCTTATCCCTGTGACACAACCTGCCATAATCTGGTCTTCAATGTTGGTAGATCTACCGTGGTTGGCTCCCAGTATATAAGTGAAAGTGATGACACATCCACCACCACCACCATGATATATTCCTCTCAGTCCTCCAGGTTGACTTTTCCTGCTCTATACCTACTAAGTGCTTTGTTTCCCACTTCCATGTTCCTACTGCACCTTAGAGTAGAAGTACTATCAAGATTCTTTAGCCATTCCACATAA 1455 0.4213 MRMKVFVIAALAFVSLVSVIDGSEHQAQLSEFVNDALFSSVSSKQLSQPQPLMVPITVINGAAAKGAVCLDGTSPAYHFHPGSGSGANSWLIHLEGGGWCNTIRNCVFRKTTRRGSFKFMEKTLPFTGILSNKPEENPDFFNWNRVKIRYCDGASFAGDSQNEANQLQFRGQKIWLAAIEELMSKGMQKANQALLSGCSAGGLASIIHCDEFGSMFPKSTKVKCLSDAGFFLDAVDVSGGHTLRNMFGGVVTLQEVQKNLPKSCLNQLDPTSCFFPQNLIQHVQTPLFLLNAAYDAWQVQESLAPHSADPSGSWNDCKANHARCNSSQIQFFQDFRNQLLNDVKDFSKSSPTGLFINSCFAHCQSERQDTWFADDSPLINDMPVAIAVGDWFFDRKTIKAIDCAYPCDTTCHNLVFNVGRSTVVGSQYISESDDTSTTTTMIYSSQSSRLTFPALYLLSALFPTSMFLLHLRVEVLSRFFSHST* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0055 484 Pfam Pectinacetylesterase 48 397 IPR004963 GO:0016787
Amo06g0055 484 PANTHER NOTUM-RELATED 3 433 IPR004963 GO:0016787
Amo06g0055 484 PANTHER PECTIN ACETYLESTERASE 3 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0055 Amo-Chr6 578807 583321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0055 47 417 Carbohydrate Esterase AT2G46930 71.968 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0055 K19882 - gmx:100785270 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0980 16 15832338 15836849 Amo06g0055 06 578807 583321 hybridization
Amo06g0055 06 578807 583321 Amo19g1336 19 27271464 27275274 PCT
Amo06g0055 06 578807 583321 Amo09g0757 09 12614418 12618291 PCT
Amo19g1336 19 27271464 27275274 Amo06g0055 06 578807 583321 PCT
Amo09g0757 09 12614418 12618291 Amo06g0055 06 578807 583321 PCT