Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0054 ATGGCTTCTTCATTTTCAATGCAGTTGACCCATACCCACAACCGTCTTCCATGGTTTCGCCATATCCAGGGTAATTATAGCCAAGATGTGGCTAAGGTTCTTAGGCCTAGTATGGTAGGTAGCAGTAGCGGATTACAGCTTGGTCATAGCAAAGCATTGGCATCAAGATCACATTATGCCCTAAGGTTTTCTGTTTTGCAACAATCTGATCCAAAATCGATCAGATATAGGACCATGGTCTGTGTCAATGCTACAGAAAACAATGTTGTAGAGCTGCAAGCCAAAGTGACAAATAAGTGCTACTTTGATGTAGAAGTTGGGGGTGAACCTGTTGGCAGGATTGTTTTGGGCCTATTTGGAGAGATCGCTCCTAAAACGGTTGAGAACTTCCGTGCTTTGTGCACAGGAGAGAAAGGGTATGGCTATAAAGGATGCTCCTTCCATCGTATAATCAAAGAATTCATGATTCAAGGAGGGGATTTTACTGAAGGAGATGGAACTGGTGGAATTAGCATCTATGGTCCCAGTTTTAAAGATGAGAGTTTTGCCTTGAAGCATGTTGGTCCTGGGGTTTTGAGCATGGCAAATGCTGGTCCTAACACCAATAGTAGTCAATTTTTTATCTGCACGACTCCTTGGCTAGACAATCGTCACGTGGTGTTTGGACACGTCATTGATGGAATGGATGTTGTGAAGACACTTGAATCCCAAGAGACAAGCAGAATGGATATCCCTCGGAAGCCTTGCAGAATTGTTAACTGCGGTGAGCTTCCTTTAGATGGTTGA 786 0.4364 MASSFSMQLTHTHNRLPWFRHIQGNYSQDVAKVLRPSMVGSSSGLQLGHSKALASRSHYALRFSVLQQSDPKSIRYRTMVCVNATENNVVELQAKVTNKCYFDVEVGGEPVGRIVLGLFGEIAPKTVENFRALCTGEKGYGYKGCSFHRIIKEFMIQGGDFTEGDGTGGISIYGPSFKDESFALKHVGPGVLSMANAGPNTNSSQFFICTTPWLDNRHVVFGHVIDGMDVVKTLESQETSRMDIPRKPCRIVNCGELPLDG* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0054 261 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 54 260 - -
Amo06g0054 261 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 142 159 IPR020892 GO:0003755|GO:0006457
Amo06g0054 261 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 102 255 IPR002130 GO:0000413|GO:0003755
Amo06g0054 261 CDD cyclophilin_ABH_like 99 255 - -
Amo06g0054 261 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 54 260 - -
Amo06g0054 261 Gene3D - 86 259 IPR029000 -
Amo06g0054 261 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 101 256 IPR002130 GO:0000413|GO:0003755
Amo06g0054 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 IPR002130 GO:0000413|GO:0003755
Amo06g0054 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 159 IPR002130 GO:0000413|GO:0003755
Amo06g0054 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 190 205 IPR002130 GO:0000413|GO:0003755
Amo06g0054 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 205 217 IPR002130 GO:0000413|GO:0003755
Amo06g0054 261 SUPERFAMILY Cyclophilin-like 94 257 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0054 Amo-Chr6 569970 572491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0054 112 254 U-box Gene Family AT5G67530 45.205 1.88e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0054 K03768 - gmx:100785805 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0984 16 15854843 15857544 Amo06g0054 06 569970 572491 hybridization