Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0044 ATGAAAACATTCTGCTTTTTATTATTGTGTTTGGTGTTATTCATTGCACAACATAGAGTTCAATGTGCACTGTGGCAGAAAGCTCATGCAACTTTCTACGGTGGAGCCGATGCCTCAGGAACAATGGGTGGTGCATGTGGCTATGGGAATCTGTACAGAGACGGTTACGGTACGAAGACGACCGGCTCTGAGCTACCCTGTTCTGTTTGTAACGACGGGAAGAGCATAGCGGGCGGTGCTATCGAGATAAGGAGTTTTGTAGATGCAAGACAAGTGCCAGCAATGGTGCTTAAGGGCACTTTCATCCAGTTCTCACTGCCGGTTACCACAAACTTTTGTCCTACAAACTATGCACTCCCTAATGGACAATGGCGGTTGGGTGTAATCCTCCAAGACACACTCGCTGGTCGCGACATGCTCTCCAACCTTTTCCTTTCTAACAATTCGCCAAATACAAGGCCGGCATCGTACCCATACTGTACAGAAAGTAAACTGTCAAGTTCGAATGTGGGTGAAGAAGGCAGTGGAGGAATAAGATTTAGCATCAATGGAAGGGATTATTTCGAATTAGTGACGATAAGCAATGTAGGTGGAGTTGGGGAGATAGGGCAAGTGTGGGTAAAAGAGTACAAAGAGAAGAATGTGTGGGAAGCAATGAGCAGGAACTGGGGTGTTAACTGGCAAAGCTTAAGCTATCTCAATGGACAGAGCTTGTCTTTCAAAGTTCAACTCACCAATGGAAGAACTCTCACTGCTTATAACGTAGCACCCTCCAATTGGAAATTTGGCCAATCTTTCACCTCTAATGTTCAAGTTCAATGTGAACTGTGGCAGAAAGCTCATGCAACTTTCTATGGTGGAGCCGATGCCTCGGGAACAATGGGTGGTGCATGTGGCTATGGGAATCTGTACAGAGACGGTTACGGTACGAAGACGACGGCTCTGAGTACCGTTCTGTTTAACGACGGGAAGGCATGCGGCGGTTGCTATCAGATAGTTTGTGATGCAAGCCAAGTGCCGCAATGGTGCCTTAAGGGCACTTTCATCACAGTTACTGCCACAAACTTTTGTCCTCCAAACTATGCACTCCCAATGAATGGCGCGTTGATGGAGGATTATTTCGAATTAGTGACGATAAGCAATGTAGGTGGAGTTGGGGAGATAGGGCAAGTGTGGGTAAAAGGGTCAAAGAAGAATGTGTGGGAAGCAATGAGCAGGAACTGGGGTGTTAACTGGCAAAGTTTAAGCTATCTCAATGGACAGAGCTTGTCCTTCACAGTTCAACTCACCGATGGAAGAACCCTCACTGCTTATAACGTAGCACCCTCCAATTGGAAATTTGGCCAATCTTTCATCTCCAATATTCAGTTCAACTAA 1377 0.4611 MKTFCFLLLCLVLFIAQHRVQCALWQKAHATFYGGADASGTMGGACGYGNLYRDGYGTKTTGSELPCSVCNDGKSIAGGAIEIRSFVDARQVPAMVLKGTFIQFSLPVTTNFCPTNYALPNGQWRLGVILQDTLAGRDMLSNLFLSNNSPNTRPASYPYCTESKLSSSNVGEEGSGGIRFSINGRDYFELVTISNVGGVGEIGQVWVKEYKEKNVWEAMSRNWGVNWQSLSYLNGQSLSFKVQLTNGRTLTAYNVAPSNWKFGQSFTSNVQVQCELWQKAHATFYGGADASGTMGGACGYGNLYRDGYGTKTTALSTVLFNDGKACGGCYQIVCDASQVPQWCLKGTFITVTATNFCPPNYALPMNGALMEDYFELVTISNVGGVGEIGQVWVKGSKKNVWEAMSRNWGVNWQSLSYLNGQSLSFTVQLTDGRTLTAYNVAPSNWKFGQSFISNIQFN* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0044 458 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Amo06g0044 458 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Amo06g0044 458 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Amo06g0044 458 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Amo06g0044 458 SUPERFAMILY PHL pollen allergen 175 268 IPR036749 -
Amo06g0044 458 PANTHER EXPANSIN-A15 272 366 IPR002963 GO:0009664
Amo06g0044 458 SUPERFAMILY PHL pollen allergen 371 453 IPR036749 -
Amo06g0044 458 PRINTS Expansin signature 349 359 IPR002963 GO:0009664
Amo06g0044 458 PRINTS Expansin signature 336 347 IPR002963 GO:0009664
Amo06g0044 458 PRINTS Expansin signature 307 321 IPR002963 GO:0009664
Amo06g0044 458 PANTHER EXPANSIN-A15 371 457 IPR002963 GO:0009664
Amo06g0044 458 Gene3D - 15 116 IPR036908 -
Amo06g0044 458 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 268 IPR007117 -
Amo06g0044 458 SMART dpbb_1 312 395 IPR007112 -
Amo06g0044 458 Pfam Expansin C-terminal domain 178 257 IPR007117 -
Amo06g0044 458 Pfam Expansin C-terminal domain 373 442 IPR007117 -
Amo06g0044 458 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 295 368 IPR007112 -
Amo06g0044 458 Gene3D - 177 272 IPR036749 -
Amo06g0044 458 Gene3D - 370 458 IPR036749 -
Amo06g0044 458 Pfam Lytic transglycolase 312 365 IPR009009 -
Amo06g0044 458 PANTHER EXPANSIN 272 366 - -
Amo06g0044 458 PANTHER EXPANSIN-A15 5 271 IPR002963 GO:0009664
Amo06g0044 458 PANTHER EXPANSIN 5 271 - -
Amo06g0044 458 PANTHER EXPANSIN 371 457 - -
Amo06g0044 458 SUPERFAMILY Barwin-like endoglucanases 11 67 IPR036908 -
Amo06g0044 458 SUPERFAMILY Barwin-like endoglucanases 273 361 IPR036908 -
Amo06g0044 458 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 373 453 IPR007117 -
Amo06g0044 458 Gene3D - 283 369 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0044 Amo-Chr6 457036 466399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0044 277 457 Expansin Gene Family AT4G01630 57.895 5.35e-84 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0044 - - aip:107648027 345.895