Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0032 ATGGACTATCGTTGGACCAATGGCAGACAGGACACTGGCAGTGGCCGAGACAGGAGACAACATAAAAGAGACCAGGCATATCAGGACTCCTTTGTTGAGAATTCGTTGGAGGATTTTCGTTTGCCGATCAACCACAGGCCAACAGAGAATGTTGACCTGGAAAATGTAGAACAAGCATCCCTTGATACGCAGTTAACATCATCTAATATTGGCTTCAAGCTTCTCCAAAAGATGGGTTGGAAAGGAAAAGGTCTTGGGAAGGATGAGCAAGGAATCATTGAGCCAATAAAGTCGGGGATGAGAGATCCAAGACTTGGGGTTGGTAAACAAGAGGAGGATGATTTTTTCACCGCAGAGGAAAATATCCAGCGAAGAAAACTAGATATTGAGTTGGAGGAGACAGAGGAAAATGTGAGAAAGCGGGAGGTGTTAGCAGAACGCGAACAAAAAATTCAAACCGAAGTGAAAGAAATTCGAAAGGTGTTCTATTGTGAACTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGTTTCAAACAAATGAAGGAAATGCATGGTRGTAGTAGCCGAGATGATAGGCAAAAACGAGAACAACAGCGTCAAGAGAAAGAGATGGCGAAGTTTGCTCAAATGGCTGATGCACAAAAGCAACAACGACTTCAACTGCAGCAAGAGTCTGGATCAGCATCAGCTTCGTCTGAATCAAAAACTGCTACTGCACTAACAGATCAAGAGCAGCGGAACACGTTGAAATTTGGGTTTTCTTCTAAAGGCACTGCTTCCAAGGTCTCGGTTGGTATCAAGAAGCCAAATATTGCAAAGAAAAAAAATGTTCCCATTTCATCGATTTTTGGCAATGATTCTGATGAAGAATAG 918 0.4248 MDYRWTNGRQDTGSGRDRRQHKRDQAYQDSFVENSLEDFRLPINHRPTENVDLENVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGMRDPRLGVGKQEEDDFFTAEENIQRRKLDIELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGXSSRDDRQKREQQRQEKEMAKFAQMADAQKQQRLQLQQESGSASASSESKTATALTDQEQRNTLKFGFSSKGTASKVSVGIKKPNIAKKKNVPISSIFGNDSDEE* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0032 305 SUPERFAMILY beta-beta-alpha zinc fingers 143 197 IPR036236 -
Amo06g0032 305 Coils Coil 117 144 - -
Amo06g0032 305 MobiDBLite consensus disorder prediction 188 223 - -
Amo06g0032 305 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 305 - -
Amo06g0032 305 SMART G-patch_5 65 110 IPR000467 GO:0003676
Amo06g0032 305 Coils Coil 219 239 - -
Amo06g0032 305 MobiDBLite consensus disorder prediction 188 269 - -
Amo06g0032 305 Pfam Zinc-finger double-stranded RNA-binding 162 189 IPR022755 -
Amo06g0032 305 ProSiteProfiles G-patch domain profile. 67 112 IPR000467 GO:0003676
Amo06g0032 305 MobiDBLite consensus disorder prediction 228 269 - -
Amo06g0032 305 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Amo06g0032 305 Pfam G-patch domain 68 108 IPR000467 GO:0003676
Amo06g0032 305 MobiDBLite consensus disorder prediction 284 305 - -
Amo06g0032 305 MobiDBLite consensus disorder prediction 11 28 - -
Amo06g0032 305 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0032 Amo-Chr6 349743 353074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0032 13 305 C2H2 Transcription Factor Family AT5G26610 65.552 1.43e-126 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0032 - - gmx:100793206 489.96