Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0006 ATGCGGAACTGTGAGGGCGTTTCGGTCATTGTATTGGGGAGCCCTAGGGTTTTAGGGGTATATTCACAATCACATAGTCGGTTGTGCTTCTGTTTCTATTCTCATTACTACTCTCTGCTGCAGCAGCGTGCGGGTGTTAGTAGGAGTACTAGTACTCATTTACATTTCCATTTTATTTTTCTCTCTTTCGCCGATTCGGTTATGGTAATGATGGATCTCAACAAGGAATGGGTGTGTGAGGAATTGAGTGAGAGCAAGAAGTGTTGTAGTGATTGCAAGACTACCAAGACTCCGCTGTGGAGAGGAGGACCTGCTGGTCCCAAGAGTCTTTGCAACGCGTGTGGAATAAGGTACCGGAAGAGAAGGGCTTCAGCGGTGGGAATGCGAAAAGGACAAGAGAGGAAGAGAGAGAGATCACAAAATGGCGGTAGCAGCAGCTCCTCTGATAACGAGTTGAAGGAGTCGTTGAAAGTGAATTTGATGGCGTTGGGCGAGGAGTTTTGGTTGCTAAAGAAGAAACAGAGGAGTATGTGTTTGTTGGGGGAAGAGGAACAAGCCGCTGTGTGTTTAATGGCACTCTCTTGTGGCTATGTTTTTGCTTAA 603 0.466 MRNCEGVSVIVLGSPRVLGVYSQSHSRLCFCFYSHYYSLLQQRAGVSRSTSTHLHFHFIFLSFADSVMVMMDLNKEWVCEELSESKKCCSDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRRASAVGMRKGQERKRERSQNGGSSSSSDNELKESLKVNLMALGEEFWLLKKKQRSMCLLGEEEQAAVCLMALSCGYVFA* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0006 200 MobiDBLite consensus disorder prediction 124 151 - -
Amo06g0006 200 Gene3D - 84 147 IPR013088 GO:0006355|GO:0008270
Amo06g0006 200 ProSiteProfiles GATA-type zinc finger domain profile. 83 119 IPR000679 GO:0006355|GO:0043565
Amo06g0006 200 CDD ZnF_GATA 89 140 IPR000679 GO:0006355|GO:0043565
Amo06g0006 200 MobiDBLite consensus disorder prediction 126 140 - -
Amo06g0006 200 Pfam GATA zinc finger 89 122 IPR000679 GO:0006355|GO:0043565
Amo06g0006 200 PANTHER OS01G0976800 PROTEIN 75 200 - -
Amo06g0006 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 86 122 - -
Amo06g0006 200 SMART GATA_3 83 133 IPR000679 GO:0006355|GO:0043565
Amo06g0006 200 ProSitePatterns GATA-type zinc finger domain. 89 114 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0006 Amo-Chr6 116623 117720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0006 55 200 C2C2-Gata Transcription Factor Family AT5G49300 45.946 2.60e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo06g0006 GATA 2.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0006 - - lang:109330084 150.599