Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4822 ATGATTCCTAGTGAGATTGATATGAGAGGTATCCAGTATCTAGCACCAGAAAACCAATTTCTTGTTCCACCTTATAATAATGATAATAATAATAATAATAATAACCTCAGTTGCTTGATTCATAGTGAAATCCCAACCTTCCGTGATAATCTAAACACGCTCTTAACCAACATACCCATCTACAGTTACAATAACAATAACTTCCCTTGTGCATTAGGAAATGACTTTATTGTCCCTCATAATTCGTCATGCCTCAGCAGCAACTCAACGACCTCCGACGAAGCCGACGAGCTTCCGCTCAGCGTGATTGACGAGCGAAAGCAGAGGCGGATGATATCGAACCGCGAGTCGGCTCGGAGGTCGAGGATGAGGAAGCAGAAACACCTTGACGAACTCTGGTCTCAGGTTGTTAGGCTCAGAAGCGAGAATCACAACCTTATTGACAAGCTCAACAACATGTCTGAGTCACATGATAGAGTTCTTCAGGAGAATGCAAGACTCAAGGAAGAAGCTTCCGATCTCCGCCAAATGATAGCGGAGATAAGTGGAAACTCGTTTGGTTGTGCTGTCAGAGGTTTCGATTTTGACGATGACGAAGACGACAACAACGATAATAATGATAATGATGATGTTCCTTGCAAGAACACTACTACTACTAAAATTCTCAGAGATGAGGAAACCAAGAACCATGTTCACTAA 699 0.4235 MIPSEIDMRGIQYLAPENQFLVPPYNNDNNNNNNNLSCLIHSEIPTFRDNLNTLLTNIPIYSYNNNNFPCALGNDFIVPHNSSCLSSNSTTSDEADELPLSVIDERKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRSENHNLIDKLNNMSESHDRVLQENARLKEEASDLRQMIAEISGNSFGCAVRGFDFDDDEDDNNDNNDNDDVPCKNTTTTKILRDEETKNHVH* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4822 232 Pfam bZIP transcription factor 106 164 IPR004827 GO:0003700|GO:0006355
Amo05g4822 232 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 226 IPR044521 -
Amo05g4822 232 CDD bZIP_plant_GBF1 107 158 IPR045314 GO:0003700|GO:0006355
Amo05g4822 232 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 104 167 IPR004827 GO:0003700|GO:0006355
Amo05g4822 232 SUPERFAMILY Leucine zipper domain 106 155 IPR046347 GO:0003700|GO:0006355
Amo05g4822 232 SMART brlzneu 102 166 IPR004827 GO:0003700|GO:0006355
Amo05g4822 232 Coils Coil 136 184 - -
Amo05g4822 232 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 109 124 IPR004827 GO:0003700|GO:0006355
Amo05g4822 232 PANTHER BZIP PROTEIN (ATBZIP48) 1 226 - -
Amo05g4822 232 MobiDBLite consensus disorder prediction 199 218 - -
Amo05g4822 232 Gene3D - 104 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4822 Amo-Chr5 122780663 122781361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4822 56 188 bZIP Transcription Factor Family AT3G30530 57.639 3.98e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo05g4822 bZIP_1 8.2e-13 CL0018