Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4804 ATGGACAAAGATCATGACATTCACAACTATTCGGCACCCATGCCCCCAACCCCAAGCTTCAACACACTAGACTACTCTCTTGATCATAATCACCACCACCACCATCTCATGCAGTTTCGCCAAGGCGAATCTTCTGGAGAACACAGCAACGGGATAGCCGATTACATCCCTCAGCAACAGCAACAACTGCCGCCAGCACCGCCGCCATCGTGTTTTTATAATGCAAACTCTTCTTCCTTTGATAAGCTCAGTTTCGCGGATGTGATGCAGTTTGCAGATTTCGGACCAAAGTTAGCCTTAAACCAAGGCAAGCCCTGCGAAGAACCGGGGATTGACCCGGTCTACTTTCTCAAGTTCCCGGTCTTAAATGATAAGATGGATGAACACAATATCATGATGATGAATCACGAAAGCGACGGTGGTGGTGGCAGAGAAGAAGTAGAAACAGAAGCAGAAAACAATAATGACGAGAGGTTCAACAACGGGGAAGAGGAAGATGCTGCCATGGGTGGAGCAGATCAAGAAGATGGAAGGATGAAAGGAGAAGAAGAAACTGCACGCATTTCCGAAGACAACAACTCAGTGCAGATTCGGTTCCTTGGCCATGGTGAAGATCTGGTGCTGAACCAGAAGAGGAACAACAARTCASCGGCGTTGATGCAGGAGAACAACAAGAACATGAAGAGGAAGAGGCCGAGAACCGTTAAGACAAGTGAAGAAGTTGAGAGCCAGCGCATGACTCACATCGCTGTTGAAAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTTCAAAGGGGTGATCAAGCATCGATAATTGGAGGAGCTATAGAGTTTGTGAGAGAATTGGAGCAACTACTTCAGTGCTTGGAATCACAAAAGAGAAGAAGGCTACTTGGAGAAGCACAAACAAGACAGGTWGGGGATTCGAATCTCGGAACACAACAGCAGCAGCCTCTTCAACCGCCTTTCTATCCGCCATTGGCATCGCCAAGCGAGCAGATGAAGCTGGTGGAGTTGGAGACCGGACTCCGCGAAGAAACCGCAGAGAGCAAGTCTTGCTTGGCTGATGTTGAAGTGAAGCTTCTGGGATTCGACGCCATGATCAAGATCCTTTCCAGGAGGAGGCCAGGCCAGTTGATCAAAACTATTGCTGCACTTGAAGATCTTCAGTTAATTATCCTTCACACCAACATTACCACCATCGAACAGACAGTACTTTATTCTTTCAATGTCAAGGTTGCTAGTGAGTCAAGGTTCACCGCAGATGATATAGCCGGCTCCGTTCAACAGATATTCAGTTTCATCCATGCAAACACCAGCATATAA 1362 0.4721 MDKDHDIHNYSAPMPPTPSFNTLDYSLDHNHHHHHLMQFRQGESSGEHSNGIADYIPQQQQQLPPAPPPSCFYNANSSSFDKLSFADVMQFADFGPKLALNQGKPCEEPGIDPVYFLKFPVLNDKMDEHNIMMMNHESDGGGGREEVETEAENNNDERFNNGEEEDAAMGGADQEDGRMKGEEETARISEDNNSVQIRFLGHGEDLVLNQKRNNKSXALMQENNKNMKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQTRQVGDSNLGTQQQQPLQPPFYPPLASPSEQMKLVELETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASESRFTADDIAGSVQQIFSFIHANTSI* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4804 453 MobiDBLite consensus disorder prediction 315 330 - -
Amo05g4804 453 Pfam Helix-loop-helix DNA-binding domain 244 295 IPR011598 GO:0046983
Amo05g4804 453 MobiDBLite consensus disorder prediction 42 60 - -
Amo05g4804 453 MobiDBLite consensus disorder prediction 312 339 - -
Amo05g4804 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 310 IPR036638 GO:0046983
Amo05g4804 453 SMART finulus 249 300 IPR011598 GO:0046983
Amo05g4804 453 PANTHER TRANSCRIPTION FACTOR FAMA 37 452 - -
Amo05g4804 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 294 IPR011598 GO:0046983
Amo05g4804 453 MobiDBLite consensus disorder prediction 133 183 - -
Amo05g4804 453 Gene3D - 234 309 IPR036638 GO:0046983
Amo05g4804 453 MobiDBLite consensus disorder prediction 40 70 - -
Amo05g4804 453 MobiDBLite consensus disorder prediction 133 164 - -
Amo05g4804 453 CDD bHLH_AtFAMA_like 246 313 - -
Amo05g4804 453 PANTHER TRANSCRIPTION FACTOR FAMA 37 452 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4804 Amo-Chr5 122387595 122391707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4804 42 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 57.639 3.63e-142 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g4804 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4804 - - ahf:112750491 813.142