Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4748 ATGATGAAAAAGGAAGAAGATCAAGGGCAGTGTTCTCCGCAAGCAATCCACAACACCATTCAAAGCTACCAAGAACAGTTATTCCTTCAGCAGCAGATGCAGCATCACAACCCAAACGGTACGGATCTTTATATCGGCAGCGGTGGAAGTGGAAGGGGGTTAGTGTTCCCTCCTGAAGCCTCTCCAATCATGCAACCACCATGGTCCATGCCACCGGTTCACCCTTTCAACCAAGCCGGTCCGGTTCACCCGGTCTCCCATCATAATGATAACAATAATAACAACCACGATCCTTTCCTTGTTCCTCCACCGCCTTCGTCGCCATACGCAAGTTTCTTCAATCGAAGGGTCCCGTCTCTGCAGTTCGCATACGAGGGCCCTTCTTCTGAACACCTCAGGATCATATCTGACTCGCTTGTTGGGCCCATGGTTCATCCCGGTTCTGTGGGCCCGTTTGGGCTCCAGGCCGAGTTAGGCAAGATGACTGCCCAAGAAATCATGGAGGCTAAGGCTCTTGCGGCCTCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCATCTTGCCAAACTCCGCAGCTTGTTGCCAAACACAACTAAAACAGATAAAGCTTCATTGCTAGCAGAAGTGATTCAGCACGTGAAGGAACTGAAGCGTCAAACTTCACTGATAGCAGAAACGAATCCAGTTCCCACAGAATCCGACGAGTTAACGGTGGATACGACGGACGAAGACGGAAGGTTTGTAATCAAAGCGTCTTTATGCTGCGAAGACCGTTCAGATCTCTTACCCGACCTCATCAAGACACTGAAGGAACTCAAGCTGAGAACCCTGAAAGCCGAGATCACCACACTCGGCGGCCGCATGAAGAATGTGTTGTTCATCACGGCGGACGAAGAAGATTATTCTAGTAGCAACGCCGGCAGTGGCGGAGGAGAGCAAAGCCTTCAGCTGGGTCATTATTGTATTAGCTCAATACAAGAAGCGCTGAGGGCTGTCATGGAGAAAGGTGGTGGTGATGAATCTGCTTCTGGGAATGTTAAGAGGCAAAGGACGAATATCAATATCCTTGAACAAAGGTCTTTATGA 1104 0.4946 MMKKEEDQGQCSPQAIHNTIQSYQEQLFLQQQMQHHNPNGTDLYIGSGGSGRGLVFPPEASPIMQPPWSMPPVHPFNQAGPVHPVSHHNDNNNNNHDPFLVPPPPSSPYASFFNRRVPSLQFAYEGPSSEHLRIISDSLVGPMVHPGSVGPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETNPVPTESDELTVDTTDEDGRFVIKASLCCEDRSDLLPDLIKTLKELKLRTLKAEITTLGGRMKNVLFITADEEDYSSSNAGSGGGEQSLQLGHYCISSIQEALRAVMEKGGGDESASGNVKRQRTNINILEQRSL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4748 367 Gene3D - 168 229 IPR036638 GO:0046983
Amo05g4748 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 231 IPR036638 GO:0046983
Amo05g4748 367 CDD bHLH_AtAIG1_like 168 245 - -
Amo05g4748 367 PANTHER TRANSCRIPTION FACTOR BHLH30 87 362 IPR045847 GO:0003700|GO:0006355
Amo05g4748 367 SMART finulus 179 228 IPR011598 GO:0046983
Amo05g4748 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Amo05g4748 367 PANTHER TRANSCRIPTION FACTOR BHLH30 87 362 - -
Amo05g4748 367 Pfam Helix-loop-helix DNA-binding domain 176 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4748 Amo-Chr5 121565497 121570103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4748 18 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 55.882 4.25e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g4748 HLH 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4748 - - gmx:100779653 433.335