Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4737 ATGGCAGGAGCATCATGGTTGGTGGACAAAAGCAGAATTGCAACCAAAATCAAGAGTGCATCAGGAGCTTGTGATCCTAACGAAGTTATTTGGAAAACCAATCCTACCAGGATTTGCCCGAATTGTCATCATCCTATTGACAATAGTGATGTAACTCAAGAGTGGCCTGGCTTACCAAAAGGGGTTAAATTTGATCCGTCAGATCAAGAGATAATCTGGCACTTGCTTGTAAAGGCTGGTGTAGGAAATTTAAAACCTCATCCTTTCATTGATGAGTTTATTACTACCCTTGAAGTGGATGATGGGATTTGTTATACTCATCCTCAACATTTACCTGGTGTCAAGCAAGACGGAAGGGCCTCACATTTCTTCCACAGAGCAATAAAGGCTTATAATACCGGTACTCGAAAGCGTCGAAAAGTACATGGTCAGGATGACGTTCGTTGGCACAAGACTGGAAGGACTAAACTGATCACCCTGAACGGGGTTCCAAAGGGTTGCAAAAAAATCATGGTTTTGTATACAAATGCGGTGAGAGGAGGAAAGTCAGAGAAAACTAATTGGGTTATGCACCAATATCACCTTGGGACAGAAGAAGATGAAAAGGAAGGAGAATATGTTATTTCTAAAGTGTTTTATAAAGAAGACCAGGATATACCTGAAGCCGCAGAAAGTAAAAATGCAACAGTTGCGAAAGTAGATCCAGTCACTCCCAAATCCACGACTCCTGAACCTCCTCGTAATGAAAGGCAAGATTCAGATCTAGGCCTGGATCTAGACCTAGGGCAAGAAGCACTTGTTTTTACTGAGATGGATTGCTTAGATGAAATTCAAGCTGACTGTGAAGAATCTGCGAAAGCTAATCCACCAGTACTGGAGACACAAGAAAATGAAGGGATGGACAACAAGGAAACTAATGCTTATGAAGCACAACCGTGGTGGGATAGTGATTCACAGAATCTATTAGATTCACAACAACTCGTTGAAGCATTAACTCTCTGCGAAGATATATTTCACAGCCAATCTTCCAACAAAGACGATGAAAATGATAAGAACCAAACCGGTCTATCTGTGTATGCTCATCTAGGACCAGAGCATCTGAAGAAGGATATTGAGGAGTGTCAAAAGCTTGCTCCTGCAGGACCAGAGCATCAGAAGGATATTGAAGACGGCCAAAATCTTGACATCGACCTTGCAAATATAGAGCGGGATACTCCTCCTGAGCATCGACTAAGTCAGCTGGAATTTGGTTCGCAGGACAGCTATACTTACTGGGGTTTTCAAGGCGTAAACTAA 1296 0.4228 MAGASWLVDKSRIATKIKSASGACDPNEVIWKTNPTRICPNCHHPIDNSDVTQEWPGLPKGVKFDPSDQEIIWHLLVKAGVGNLKPHPFIDEFITTLEVDDGICYTHPQHLPGVKQDGRASHFFHRAIKAYNTGTRKRRKVHGQDDVRWHKTGRTKLITLNGVPKGCKKIMVLYTNAVRGGKSEKTNWVMHQYHLGTEEDEKEGEYVISKVFYKEDQDIPEAAESKNATVAKVDPVTPKSTTPEPPRNERQDSDLGLDLDLGQEALVFTEMDCLDEIQADCEESAKANPPVLETQENEGMDNKETNAYEAQPWWDSDSQNLLDSQQLVEALTLCEDIFHSQSSNKDDENDKNQTGLSVYAHLGPEHLKKDIEECQKLAPAGPEHQKDIEDGQNLDIDLANIERDTPPEHRLSQLEFGSQDSYTYWGFQGVN* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4737 431 MobiDBLite consensus disorder prediction 222 256 - -
Amo05g4737 431 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 426 IPR044799 GO:0003700
Amo05g4737 431 ProSiteProfiles NAC domain profile. 58 214 IPR003441 GO:0003677|GO:0006355
Amo05g4737 431 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 426 - -
Amo05g4737 431 SUPERFAMILY NAC domain 43 214 IPR036093 GO:0003677|GO:0006355
Amo05g4737 431 Pfam No apical meristem (NAM) protein 59 195 IPR003441 GO:0003677|GO:0006355
Amo05g4737 431 MobiDBLite consensus disorder prediction 379 407 - -
Amo05g4737 431 Gene3D NAC domain 67 219 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4737 Amo-Chr5 121319895 121324290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4737 14 214 NAC Transcription Factor Family AT1G28470 52.830 6.32e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g4737 NAM 8.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4737 - - adu:107491284 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4737 05 121319895 121324290 Amo15g1265 15 99335316 99339495 hybridization