Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4720 ATGCAAACTCATCATCACTCTTTCTCATCCTACATATCCTCTTGTGGGAGTAGTAGTACTACTAGTCCCTTCTTGGACAATCCCGAAGATGCCGATGTTGTGCTTCTTGATGACGAAGAAGCCTCCATTTCCCTTTCTCTTGGGCCTCCCGGCCAACATCACAACCCCAAGATCTCTACAACTTCACCACTACTGCACCATAACCATTACAATCCCAACCCTAACTGTGATGATGACCAGAGTGGTGTAACAGTTGCTCTACACATTGGCCTTCCTTCCACAACAACAACTGCACCCAACACCACCACCACCATCAGCACCACAACAAGTAAAACTGATACCCTTCAGGGTCAGTACTGGATCCCTTCCCCTGCACAAATCCTCATTGGTCCCACTCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAATCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGGTCACAATATAGGAAAGGACCAGAATCATTAAGAGGAGCAAAGCCAGCATCTTCAATGCTGAGGCTACCATGCTATTGTTGCGCGGAAGGTTGCAAGAACAACATAGAGCACCCAAGATCAAGGCCTCTCAAGGATTTCAGGACACTGCAGACTCACTACAAGAGAAAGCATGGCGCCAAGCCCTTCGGCTGCCGCAAGTGCGGTAAGCCCTTCGCCGTCCGAGGAGATTGGAGGACGCACGAGAAGAATTGCGGCAAACTTTGGTTTTGCATATGTGGCTCCGATTTCAAGCACAAGAGGTCCCTCAAGGACCATGTCCGCGCCTTCGGCGACGGCCATGCTCCTCATACTGTGGAGAGCTGTGACCAGTTCGTCGATGAAGAAGAAGATGATTATGAACTTGATGATGATGACGACCTAGACTTAGAAGATAATAACAACAATAATAGTAACGGCAATCAAGGTGTTTTTAGTTTCAATTAA 954 0.4759 MQTHHHSFSSYISSCGSSSTTSPFLDNPEDADVVLLDDEEASISLSLGPPGQHHNPKISTTSPLLHHNHYNPNPNCDDDQSGVTVALHIGLPSTTTTAPNTTTTISTTTSKTDTLQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQFVDEEEDDYELDDDDDLDLEDNNNNNSNGNQGVFSFN* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4720 317 PANTHER ZINC FINGER PROTEIN WIP6 2 306 - -
Amo05g4720 317 MobiDBLite consensus disorder prediction 291 317 - -
Amo05g4720 317 MobiDBLite consensus disorder prediction 1 26 - -
Amo05g4720 317 Gene3D Classic Zinc Finger 177 266 - -
Amo05g4720 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 161 IPR013087 -
Amo05g4720 317 PANTHER ZINC FINGER PROTEIN WIP2 2 306 IPR043584 GO:0003700|GO:0010468
Amo05g4720 317 MobiDBLite consensus disorder prediction 302 317 - -
Amo05g4720 317 SUPERFAMILY beta-beta-alpha zinc fingers 202 239 IPR036236 -
Amo05g4720 317 SUPERFAMILY beta-beta-alpha zinc fingers 127 156 IPR036236 -
Amo05g4720 317 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4720 Amo-Chr5 120830296 120831820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4720 36 275 C2H2 Transcription Factor Family AT1G13290 71.429 2.93e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo05g4720 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4720 - - aprc:113870355 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4720 05 120830296 120831820 Amo15g1291 15 101155039 101156910 hybridization