Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4709 ATGGGGATAAAAATGCAAAGCTTCAAGACAGCTCAAACAAGCTCCCAACTGTATTGTCATTCTCCCTTCTTGCTTCGGGGAGACAATAATACCAACCGGAACCCAACACGTTTCTCTGATCTTGGCGAGATTCAACATTCTGCACCTGTGTTTCATCATGAAGATGCTGTTGATTTAAGCTCAAGCTCAATGTTTAACATGAAGTCCAACAATGTAGCTGTTTCTGTTGCTGGCACTAACTTGCAGTATGGGACGTTGACCACGACGAACCTTGGGAGTGCAGAGGTTGGTGGTTCAAGTGGGGGTGGGTGCCTGGATACAGGGATAAACATGTACCAGCAAAAAGGGATGGCTATGCCAAACATGCCTTTAGGAAATGGTCATGTTGAGAATTGGGGTGATTCAGGCATGGCTGACAACAGCCAACAGACTGATGATACTTCCACAGATATTGACATCGATGACAGAAATCAATGCAATAGAGTTCAGCATGGGGCACCCACGGTTGTGGACTCGAAGGATGAGACAAAGATCAAAGCTGTTGACCAGAAGACTATGCGGAGGCTTGCTCAAAATCGAGAGGCAGCAAGGAAAAGTCGGTTAAGAAAAAAGGCATATGTACAGCAGCTGGAGAACAGCCGAGCCAAACTCTTACAATTGGAGCAAGAGCTTCAGCGAGCACGTCAGCAGGGTATATTTATTGCAACTAACGGGGATCATACTCATTCATCTCTTGGAAATGGGGCCTTAGCATTTGATATGGAGTATGCCCGGTGGGTTGATGAGCAACAACATTTGCTAAATGACCTTAGATCAGCCTTAAATTCCCAAATGGGAGATAATGAACTGCATCTTCTTGTTGATGGTGTCATGGCACATTATGACGAATTATTTCGGTTAAAGAGCATAGGAGCAAAGGCTGATGTCTTTCACATGCTCTATGGGATGTGGAAGACACCTGCCGAAAGGTGGCTGATGTGGCTCGGCGGATTCCGGTCGTCTGAACTTCTCAAGATAGTTAAGAACCACCTCGAGCCCTTAACAGAACAGCAGTTGTTGGGGATTTGTAATCTTCAGCAGTCTTCTCATCAGGCAGAGGATGCTTTGAATCAAGGTATGGAGGCGTTGCAACAATCTCTTTCGGACACACTTTCCTCGGCCGCCCTAGGACCCACCGGTGCCGGAAATGTTGCCGATTATATGAGCCAAATGGCAATTGCAATGGGTAAGATTGCCAATCTGGAGAGTTTCCTTCATCAGGCTGATGTATTGAAGCAAGAAATGCTGCAGCAGTTGCAACGAATTTTGACCACGCGACAAATTGCACGAGCCCTCCTTGTAATGAATGATTACATTTCAAGACTAAGAGCWCTCAACTCATTATGGTTAGCGCGCCCTAGAGAGTAG 1407 0.4606 MGIKMQSFKTAQTSSQLYCHSPFLLRGDNNTNRNPTRFSDLGEIQHSAPVFHHEDAVDLSSSSMFNMKSNNVAVSVAGTNLQYGTLTTTNLGSAEVGGSSGGGCLDTGINMYQQKGMAMPNMPLGNGHVENWGDSGMADNSQQTDDTSTDIDIDDRNQCNRVQHGAPTVVDSKDETKIKAVDQKTMRRLAQNREAARKSRLRKKAYVQQLENSRAKLLQLEQELQRARQQGIFIATNGDHTHSSLGNGALAFDMEYARWVDEQQHLLNDLRSALNSQMGDNELHLLVDGVMAHYDELFRLKSIGAKADVFHMLYGMWKTPAERWLMWLGGFRSSELLKIVKNHLEPLTEQQLLGICNLQQSSHQAEDALNQGMEALQQSLSDTLSSAALGPTGAGNVADYMSQMAIAMGKIANLESFLHQADVLKQEMLQQLQRILTTRQIARALLVMNDYISRLRALNSLWLARPRE* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4709 468 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 226 IPR004827 GO:0003700|GO:0006355
Amo05g4709 468 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 42 468 - -
Amo05g4709 468 SUPERFAMILY Leucine zipper domain 184 227 IPR046347 GO:0003700|GO:0006355
Amo05g4709 468 Gene3D - 183 232 - -
Amo05g4709 468 Coils Coil 203 230 - -
Amo05g4709 468 PANTHER TRANSCRIPTION FACTOR TGA9 42 468 - -
Amo05g4709 468 CDD bZIP_HBP1b-like 184 236 - -
Amo05g4709 468 ProSiteProfiles DOG1 domain profile. 249 465 IPR025422 GO:0006351|GO:0043565
Amo05g4709 468 SMART brlzneu 180 258 IPR004827 GO:0003700|GO:0006355
Amo05g4709 468 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 187 202 IPR004827 GO:0003700|GO:0006355
Amo05g4709 468 Pfam Seed dormancy control 267 341 IPR025422 GO:0006351|GO:0043565
Amo05g4709 468 Pfam bZIP transcription factor 184 222 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4709 Amo-Chr5 120649493 120656137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4709 7 468 bZIP Transcription Factor Family AT1G68640 55.814 7.50e-166 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo05g4709 DOG1 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4709 K14431 - gmx:100797393 656.366