Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4682 ATGGGTGCTGGCCACAGTTTTCTTGGTTTCTTTTTACTCCTCTGCTGTTTTGGGCTTCTTCACTCTGCTCCAAATAAGAAAACAGATGAAGGGAAGAGCCGGTACTCGGCGCCGCCTTTCGAGTGTGGAAAGTTCGGGAAGCTTTGGTACCCTTTCACCAACACTAGTTGCTCAGAATGTGGCCTGCACGTAAGTAATTGTGATAACCCAGGTGCAGATGTTCAAGTTTTTCTTAGAAACCAAACATACAAACTTGAAAGTATAGCTTGGAAGGATAATTTTTCTGCTATAATTTTCATCCAAGAAACCGGTGCCGCTGTAAATTTATGGGAGCTTCGTGGGGACTTGTCTCTCCGGGTAGTAAACCGCGTTGCCTTCTTCAAATGCACTCATGAGTATCACCCTGAAGACCATGGCATATTTCACTATGAAAGGTGTCATTCTACAAATTATGATGTGTATTTCGGTTCGGATCATTCCTTTCCTTCAGATTCTATGTATGGTGATCGAATGTTCCCTAGTTTGTTAAACGCGTGTTCAGATGATACGAGTGAAACACAAGAACAACCCAATTCCACTCAACAGTGCACATCCTTCAAGTCTTTTGTTATAATCGAAGTAACATCTGCAGATCCTCTTTACTCATATTGGCCAGTGACTCGTACAACGGGAAAGACAGGGGCTTCGAAGGCAGCAATATTAGGTTTATCTACCGGATTGGCTGCTATGATCATAGTTGCCACGTGTCAGTTATGTGCAATTCTTTTAGTGTACAAACGGAGACACAATTCTTCAGGAGGCTATGGAGGCAAATTAAGGAACCTGTATTCTCGCCCAAATTCAAACACAAACCCAGAAAGTGGAAATCTCTACTTCGGAATCCCTCTCTTCTCCTATGAAGAACTCCAAGTCGCAACTAACAATTTTGACCAAACTAAAGAACTTGGAGAAGGTGGCTTTGGAACTGTTTACTATGGAAAGCTTAGAGATGGACGAGAAGTTGCAGTGAAACGCCTATTCGAGCGTAACTACAAGCCAGTTGAATCATTCATCAACGAGATTCAGATCCTCACACGCTTGCGCCATAGGAATCTCGTATCCCTCTATGGCTGCACTTCACGTCATTCTCGTGAGCTACTCCTTGTGTATGAATACATCCCTAATGGAACTCTCAGTTATCATCTCCGCGGTGACAGAACAAAGTCAAGCACATTGACCTGGCCGGTGAGAATGAAAATCGCCATTGAAACTGCTTGTGCATTGGCTTATCTCCATGCTTGCGGTATCATTCACCGTGACGTGAAAACCAGCAACATTCTCCTTGACAACAACTTCGGTGTTAAGGTTGCTGATTTTGGGCTTTCTAGATTGTTCCCCAGTGACGTCACACATGTCTCCACGGCGCCACGTGGAACCCCTGGTTATGTTGACCCGGACTACCGTCTGTGCTACCAGCTTACAAACAAGAGTGATGTGTACAGTTTCGGAGTGGTTCTTGTTGAGTTAATATCGTCGCTGCCGGCTGTTGATATGAACAGAGAAAGGGATGATGTTAAGTTGGCGAATGTAGCTGTAAGGAAGTTTCAAAAGGGAGCGTTTTGTGAATTGGTGGATCCTTCTCTTGGAATTCAGTCAGACGATGATTCAAGAAGGATGATAATTTCGGTGGCCAAATTGGCTTTTCAGTGTTTGCAGGGAGACAAGGACATGAGACCCTCTATGACTGAGGTGTTGGAGGCGCTGCAGAGGATTCAAATTGGGAGGGAAGAGCGTACAGAGGTTCAGCGCCCTGGCGTTTCGCTGGATTATGCGGCAGCTCCAAATTCTTTGACCAACAACACCCAGCGCCGTCCCCAAACATTCTGA 1866 0.4507 MGAGHSFLGFFLLLCCFGLLHSAPNKKTDEGKSRYSAPPFECGKFGKLWYPFTNTSCSECGLHVSNCDNPGADVQVFLRNQTYKLESIAWKDNFSAIIFIQETGAAVNLWELRGDLSLRVVNRVAFFKCTHEYHPEDHGIFHYERCHSTNYDVYFGSDHSFPSDSMYGDRMFPSLLNACSDDTSETQEQPNSTQQCTSFKSFVIIEVTSADPLYSYWPVTRTTGKTGASKAAILGLSTGLAAMIIVATCQLCAILLVYKRRHNSSGGYGGKLRNLYSRPNSNTNPESGNLYFGIPLFSYEELQVATNNFDQTKELGEGGFGTVYYGKLRDGREVAVKRLFERNYKPVESFINEIQILTRLRHRNLVSLYGCTSRHSRELLLVYEYIPNGTLSYHLRGDRTKSSTLTWPVRMKIAIETACALAYLHACGIIHRDVKTSNILLDNNFGVKVADFGLSRLFPSDVTHVSTAPRGTPGYVDPDYRLCYQLTNKSDVYSFGVVLVELISSLPAVDMNRERDDVKLANVAVRKFQKGAFCELVDPSLGIQSDDDSRRMIISVAKLAFQCLQGDKDMRPSMTEVLEALQRIQIGREERTEVQRPGVSLDYAAAPNSLTNNTQRRPQTF* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4682 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Amo05g4682 621 Gene3D Transferase(Phosphotransferase) domain 1 386 596 - -
Amo05g4682 621 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 27 618 IPR044652 -
Amo05g4682 621 ProSiteProfiles Protein kinase domain profile. 309 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4682 621 Gene3D Phosphorylase Kinase; domain 1 282 385 - -
Amo05g4682 621 Pfam Protein kinase domain 310 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4682 621 SUPERFAMILY Protein kinase-like (PK-like) 290 591 IPR011009 -
Amo05g4682 621 MobiDBLite consensus disorder prediction 605 621 - -
Amo05g4682 621 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Amo05g4682 621 MobiDBLite consensus disorder prediction 597 621 - -
Amo05g4682 621 SMART serkin_6 309 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4682 621 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 27 618 - -
Amo05g4682 621 CDD STKc_IRAK 315 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4682 Amo-Chr5 120195387 120202338 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4682 234 585 Receptor kinase-like Gene Family AT1G25390 60.623 5.89e-143 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Amo05g4682 Pkinase 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4682 - - ahf:112802646 1247.65