Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4658 ATGGGAAACTGCAACGCTTGCGCCAGAGCAGATGTAGTAGACAGCACAACAACCACAATCACAAAGCCTACCACCAACAACCGAAAACCGAACCCCTTTTCCTCCACTCCGGCCCGGCCAGCCAACCCGATCCGCGTCCTCAACAACGACATCCCCGCGGGCCCGCAGCACCGGGCCCGAATCAGCGACGATTACATACTTGGCCGTGAGCTGGGCCGCGGCGAATTCGGCATAACCTACCTCTGCACTGACCGCGAGACCAAAGAAGCTCTCGCATGTAAGTCCATCTCGAAGCGGAAGCTCCGCACCGCTGTCGACGTAGACGACGTGCGGCGCGAGGTGAAGATCATGTCCACGCTGCCGCCGCATCCGAACGTGGTGCAGCTGAAGGGAGCTTACGAGGACGACGAGAACGTTCACATAGTTATGGAGCTCTGTGAGGGCGGCGAGCTCTTCGATAGGATCGTTGCCAGGGGACACTACAGCGAGCGCGCCGCCGCCGGAGTGTTCCGGACGATCGCGGAGGTTGTTAGGATGTGCCACGCTAACGGTGTCATGCATAGAGACCTCAAGCCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCGCCCCTCAAGGCCATTGATTTTGGCTTGTCTGTGTTCTTCAAGCCAGGGGAGAGGTTTTCGGAGATTGTGGGGAGTCCTTACTACATGGCGCCGGAGGTATTGAAGAGGAATTATGGACCGGAGATAGATGTGTGGAGTGCTGGTGTGATCCTTTATATTTTGCTCTGTGGGACGGAGCAAGGTGTGGCTCTGGCAATATTGAGGGGGGTGATTGATTTCAAGAGGGAACCTTGGCCYCATATATCAGATAGCGCTAAAAGCCTTGTCCGGCAGATGTTGGAACCAGATCCTAAAAAGCGCTTGACTGCTGAACAGGTGCTTGCACATCCATGGCTACAAAATGCCAAGAAAGCTCCAAATGTTCCATTAGGTGATCTTGTGAGGTCAAGGCTTAAGCAGTTTTCTATGATGAATAGATTCAAAAAGAAAGCTCTTCGGGTAATTGCAGATCATTTATCTGTTGAAGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGACACCAACAAAGACGGAAGAGTAACATACGAAGAACTAAAGGCTGGGTTGAGGAAAGTAGGTTCACAATTGGCTGAGCCAGAGATAAAGTTGCTGATGGAAGTGGCCGATGTCGATGGGAATGGAATACTTGACTATGGGGAGTTTGTAGCTGTTACCATTCACTTGCAAAAAATGGAGAACGATGAGCATTTCCGCAAAGCATTCAAGTATTTTGACAAAGACAGTAGTGGTTATATTGAGTTTGGTGAACTACAGGAAGCATTAGCAGATGAGTCAGGAGAAACTGATCATGATGTTTTGAATGACATCATGCGTGAAGTTGACACTGATAAGGATGGTCGCATCAGTTWTGAGGAGTTTGTTGCCATGATGAAAACTGGAACTGACTGGAGAAAAGCATCTAGGCAATATTCAAGGGAGAGATTCAAGAGTTTGAGCCTAAACTTGATGAAAGACGGCTCTCTTCAGCTTCATGACGGTATCAGTGGTCAAGCTGTAGTGGCGACGTATCTCCTTATTGGTTAG 1641 0.4918 MGNCNACARADVVDSTTTTITKPTTNNRKPNPFSSTPARPANPIRVLNNDIPAGPQHRARISDDYILGRELGRGEFGITYLCTDRETKEALACKSISKRKLRTAVDVDDVRREVKIMSTLPPHPNVVQLKGAYEDDENVHIVMELCEGGELFDRIVARGHYSERAAAGVFRTIAEVVRMCHANGVMHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGTEQGVALAILRGVIDFKREPWPHISDSAKSLVRQMLEPDPKKRLTAEQVLAHPWLQNAKKAPNVPLGDLVRSRLKQFSMMNRFKKKALRVIADHLSVEEVEIIKDMFTLMDTNKDGRVTYEELKAGLRKVGSQLAEPEIKLLMEVADVDGNGILDYGEFVAVTIHLQKMENDEHFRKAFKYFDKDSSGYIEFGELQEALADESGETDHDVLNDIMREVDTDKDGRISXEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDGISGQAVVATYLLIG* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4658 546 ProSiteProfiles Protein kinase domain profile. 65 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4658 546 MobiDBLite consensus disorder prediction 18 53 - -
Amo05g4658 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Amo05g4658 546 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Amo05g4658 546 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Amo05g4658 546 SMART serkin_6 65 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4658 546 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Amo05g4658 546 Gene3D - 325 500 - -
Amo05g4658 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 12 516 - -
Amo05g4658 546 Pfam EF-hand domain pair 434 497 IPR002048 GO:0005509
Amo05g4658 546 Pfam EF-hand domain pair 364 423 IPR002048 GO:0005509
Amo05g4658 546 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Amo05g4658 546 CDD STKc_CAMK 64 315 - -
Amo05g4658 546 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Amo05g4658 546 Gene3D Transferase(Phosphotransferase) domain 1 151 324 - -
Amo05g4658 546 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Amo05g4658 546 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Amo05g4658 546 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Amo05g4658 546 PANTHER BNAA09G44420D PROTEIN 12 516 - -
Amo05g4658 546 SMART efh_1 471 499 IPR002048 GO:0005509
Amo05g4658 546 SMART efh_1 363 391 IPR002048 GO:0005509
Amo05g4658 546 SMART efh_1 435 463 IPR002048 GO:0005509
Amo05g4658 546 SMART efh_1 399 427 IPR002048 GO:0005509
Amo05g4658 546 MobiDBLite consensus disorder prediction 18 35 - -
Amo05g4658 546 SUPERFAMILY Protein kinase-like (PK-like) 57 341 IPR011009 -
Amo05g4658 546 ProSitePatterns EF-hand calcium-binding domain. 372 384 IPR018247 -
Amo05g4658 546 Gene3D Phosphorylase Kinase; domain 1 66 150 - -
Amo05g4658 546 Pfam Protein kinase domain 67 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4658 546 SUPERFAMILY EF-hand 344 523 IPR011992 -
Amo05g4658 546 CDD EFh 435 497 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4658 Amo-Chr5 119707407 119712761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4658 1 538 EF-hand Containing Proteins AT1G18890 78.165 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Amo05g4658 Pkinase 1.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4658 K13412 - gmx:100809838 936.021