Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4638 ATGTCTTCTCCAACACCAACCATGGATCCCTCTTCACGCCACTACTCCTACAATCGCAAACAGAAATCCCTCGGCCTCTTGTGCACCAATTTCTTGAAATTGTATAATAAGGACAGCATCCACTTGATCGGCCTCGACGATGCAGCTTCTCGATTAGGTGTTGAGAGGCGGCGGATCTATGATATAGTGAACGTCTTAGAGAGTGTCGGGGTGCTTTCTAGAAAAGCTAAGAATCAGTATACTTGGAAAGGGTTTGCTGCTATTCCTGGGGCTTTACAAGAACTCAAGGACGAGGGTTTGAGGGAGAATCCCTATGGTTTTGACGGTGATAATGAAATTGCAAAATTGTCAGATGACGAGGATGACGAAGAAACAATGTCAAATCCCAGTAATGGAAGTCAGAATGACAAATCAAATCCCAATGCCTCACTTACAAAATCATTGAAGCCTGAAAACAGAAGGGAAAAATCTCTGGCGCTTCTTACTCAAAATTTTGTCAAGCTCTTTGTCTGCTCTAATATCGAAATGATTTCCCTTGACGAAGCTGCAAAGCTGTTGCTTGGAAATGCCCATAATACATCAATAATGAGAACAAAAGTCAGACGCTTATATGATATTGCAAATGTTTTGTCCTCCATGAATCTAATCGAGAAGACCCATACAACAGACACAAGAAAACCAGCATTCAGGTGGCTTGGTTTAAGAGGGAAACCATGGAGTGAGTCAGGTGACTCTGCTCTAAATTCGAATCACAGTGGCGAATCAAGGAAAAGGATGTTTGGTGAAGACATCACCAACATTAGCTTCAAGAGGAACAAAGTGGATCCGTTTATGAATGCTGAGAATAGCTGCAAGAGTTACTCCAAGATTCAAGACCAACTCGAAAACGATGATGATAGTTGTTGGCAAGCTCACACGGATAAAGGCATCGTGAAACAAGAAAGAAAACAGAATTCAAAGGGCTACCATTTTGGTCCTTTTGCTCCAGAGTATGTTTCCAAGAATGGTGGAGCCTCTGAGAATACTAATGTGAAGCAGGTTCATGATTGGGAGAGTCTCTCAAATGTGTATCGTCCTCGGTATCAAAATCAAGCTTTGAGAGACCTCTTCTCCCACTACATGGAAGCATGGAAATCTTGGTACTCTGAAGTTGCAGGGAAAAGGCCAATACAAATTTTGTAG 1182 0.4222 MSSPTPTMDPSSRHYSYNRKQKSLGLLCTNFLKLYNKDSIHLIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYTWKGFAAIPGALQELKDEGLRENPYGFDGDNEIAKLSDDEDDEETMSNPSNGSQNDKSNPNASLTKSLKPENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLRGKPWSESGDSALNSNHSGESRKRMFGEDITNISFKRNKVDPFMNAENSCKSYSKIQDQLENDDDSCWQAHTDKGIVKQERKQNSKGYHFGPFAPEYVSKNGGASENTNVKQVHDWESLSNVYRPRYQNQALRDLFSHYMEAWKSWYSEVAGKRPIQIL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4638 393 MobiDBLite consensus disorder prediction 127 147 - -
Amo05g4638 393 MobiDBLite consensus disorder prediction 101 153 - -
Amo05g4638 393 SUPERFAMILY "Winged helix" DNA-binding domain 155 234 IPR036390 -
Amo05g4638 393 PANTHER TRANSCRIPTION FACTOR E2F 11 384 IPR015633 GO:0000978|GO:0006357
Amo05g4638 393 Gene3D - 149 235 IPR036388 -
Amo05g4638 393 Gene3D - 14 86 IPR036388 -
Amo05g4638 393 SUPERFAMILY "Winged helix" DNA-binding domain 18 82 IPR036390 -
Amo05g4638 393 Pfam E2F/DP family winged-helix DNA-binding domain 155 233 IPR003316 GO:0005667|GO:0006355
Amo05g4638 393 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Amo05g4638 393 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 11 384 - -
Amo05g4638 393 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Amo05g4638 393 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4638 Amo-Chr5 119488298 119494421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4638 14 390 E2F-DP Transcription Factor Family AT3G48160 58.793 1.01e-137 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Amo05g4638 E2F_TDP 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4638 K09391 - gmx:100795252 517.694