Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4623 ATGACTCCGAATAATCCCCATTCCCATCCACCCCCCGATCCCCGCCGTCCCCTATCATTCCCAGCGGTCCACCCCTCCGACACCATCTCTCCTGCCACACTCCTCTCCTCCCTTCTCACCCTCTCCCAATCCATCCTCAACACCACCACCTTCTTCACACAACGCCGCAACGCCCGTGAGGCCACGCGCCAAGTCTCCCTCCTCCTCATCTTCCTCCAAGACCTCCACGCTTCCCTCCTCCCAAACGACGCCGTTCCCTCCCTCTCCGACCTCCACTTCTCCTTCCAGAATCTTCACTTCCTCTTACAAGATTGCTCCCGCGAAGGTGCCCGCCTCTTCATGCTCCTCAAGTCCCGCCACGTGGCATCCCAATTACGGTCACTCTTTCGCACTATCGCTGCCACCCTCGACGCGCTGCCCCTCCACGTCATCAAAGTTTGTTGGGAAGTTAGAGAGTTAGTTGAGTTAGTTAGGAAGCAAGCCAGGAAAGTCACCTTCGAACTCGATCCGGAAGACCAAACCGAAGCCCAACGAGTTAACTCGGTTTTGCAGCAGTTCGAGAGAGGAATCGAGCCTGATTTAAACGCCATGAAGCGAACCCTCACCTACCTCGAAATCAAGACATGGATCGATTGTAACAGAGAGGTGAAGTTTCTAGAAGACGTGATGCTCTCTTCCGCRTCCTCTGTTTCCGACGAAGAAGAGGTTTCCTTGTTGAGCGGTTTGATTTCGTTCTTGTGTTACTGCAGAGGAGTGATATTCGAAGACGTTGATTTCCCGTCTCTTCATGAAAATTCCCAATCCGAGGGAAGGAGCAGCGGTGGCAGTGAAGAGTTGAGCTGCGAGAAGCGGCCGCCGGAGGATTTCCGGTGTCCGATCTCACTGGAGTTGATGATTGATCCGGTGACTACTTCCACCGGCCAGACTTACGACCGCATCTCGATTCAGAAATGGCTTAAAGCTGGAAACAGAGTGTGTCCCAAAWCAGGGGAGAGGCTCACCAACACAGAGTTGGTTCCAAACACGWCACTGAAAAGGCTCATCCAACAATTCTGYGTTGATAATGGCATCTCGGTAGCCAAGCCAAGCAACCGGAGTCACCACCGCACTGGAGTATCAGCCGAGGCTGGTAGTCCAGCAGCGGCGCACGCCGTACAGTTCCTCTGCTGGTTTCTTGCCCGGAAACTCGCCTTTGGAACAGAGGAGCAACAGAACAAGGCTGCTTACGAGGTTCGCCTGCTCGCGAGGTCTAACGTTTTCAACCGGACGTGTTTGGTTGAGGTTGGGACCGTGCCGCCTTTGATTGATCTTCTTAGCACCGGTGACAGAACAGTGCAAGAGAATGCAATTGCTGCACTGTTGAAGCTCTCGAAGCATAGCAGTGGCCAGCAATGTATAATGGAGAGCAGGGGTTTGGCGCCAATTCTCAAAGTGCTAAATAGAGGGCTTAGTTTGGAATCTCGCCAAATGGCAGCTGCTACCATATTCTATCTTTGTTCCGTGAAAGAATTTAGAAAAATCATTGGAGATAATCCGGAGGGGATTCCCGGTTTGGTGGAGATGATCAAAGAAGAAAGAAAAACAATCCATTCTTGTTTAGCTGGCAAGGATAGGCTATATAGATCAGACGATGCTATAATGTGTGGGAAGAAGAATGCTGTGGTTGCGATTTTTGGGCTGCTCTTACATCCCCAGAATCACTCAAAAGTGCTGGCAGCCGGAGCGGGTCCTGCAATTGTTAGTGTGTTATCTTCTTCCTTGGACAAAGCTGGTCTCGTCACGGATTGCCTAGCAGTTCTAGCTGCATTGGCCGAGACAGCCGAGGGAGCGAGGGCCGTGTTAGAAGCTGACGCATTGCACTTGATCATTTGGATCTTGAAGTCCGAAACCTCGCGTGTGGCAAAGGAGCACTGCGTGTCGATTTTGTTGTCTCTTTGTGTTCATGGTGGTTCAGGGGTTGTAGCTTTTCTTGTTGCGGAATCTTCAATCATGCCTTTGCTATATTGGATCATCACTGATGGTACCCCTCATGCTGCAAAGAAAGCACGCTCCCTCATCAGAGTTCTACAGGAATTCAATGAACAAAGAACTTCTGGATTGGTTGGGTCCTCATCAGTTTTGCGACAACCATTGATTCACATGAGTTAG 2148 0.5107 MTPNNPHSHPPPDPRRPLSFPAVHPSDTISPATLLSSLLTLSQSILNTTTFFTQRRNAREATRQVSLLLIFLQDLHASLLPNDAVPSLSDLHFSFQNLHFLLQDCSREGARLFMLLKSRHVASQLRSLFRTIAATLDALPLHVIKVCWEVRELVELVRKQARKVTFELDPEDQTEAQRVNSVLQQFERGIEPDLNAMKRTLTYLEIKTWIDCNREVKFLEDVMLSSASSVSDEEEVSLLSGLISFLCYCRGVIFEDVDFPSLHENSQSEGRSSGGSEELSCEKRPPEDFRCPISLELMIDPVTTSTGQTYDRISIQKWLKAGNRVCPKXGERLTNTELVPNTXLKRLIQQFCVDNGISVAKPSNRSHHRTGVSAEAGSPAAAHAVQFLCWFLARKLAFGTEEQQNKAAYEVRLLARSNVFNRTCLVEVGTVPPLIDLLSTGDRTVQENAIAALLKLSKHSSGQQCIMESRGLAPILKVLNRGLSLESRQMAAATIFYLCSVKEFRKIIGDNPEGIPGLVEMIKEERKTIHSCLAGKDRLYRSDDAIMCGKKNAVVAIFGLLLHPQNHSKVLAAGAGPAIVSVLSSSLDKAGLVTDCLAVLAALAETAEGARAVLEADALHLIIWILKSETSRVAKEHCVSILLSLCVHGGSGVVAFLVAESSIMPLLYWIITDGTPHAAKKARSLIRVLQEFNEQRTSGLVGSSSVLRQPLIHMS* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4623 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Amo05g4623 715 SMART Ubox_2 288 351 IPR003613 GO:0004842|GO:0016567
Amo05g4623 715 MobiDBLite consensus disorder prediction 264 287 - -
Amo05g4623 715 MobiDBLite consensus disorder prediction 1 25 - -
Amo05g4623 715 SUPERFAMILY ARM repeat 396 692 IPR016024 -
Amo05g4623 715 PANTHER U BOX DOMAIN-CONTAINING 12 699 - -
Amo05g4623 715 Pfam U-box domain 286 355 IPR003613 GO:0004842|GO:0016567
Amo05g4623 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 359 IPR013083 -
Amo05g4623 715 MobiDBLite consensus disorder prediction 1 19 - -
Amo05g4623 715 ProSiteProfiles U-box domain profile. 284 358 IPR003613 GO:0004842|GO:0016567
Amo05g4623 715 Pfam Armadillo/beta-catenin-like repeat 421 457 IPR000225 GO:0005515
Amo05g4623 715 Gene3D - 538 705 IPR011989 -
Amo05g4623 715 PANTHER OS07G0532750 PROTEIN 12 699 - -
Amo05g4623 715 CDD RING-Ubox_PUB 289 331 IPR045210 -
Amo05g4623 715 SUPERFAMILY RING/U-box 280 359 - -
Amo05g4623 715 Gene3D - 366 536 IPR011989 -
Amo05g4623 715 SMART arm_5 459 500 IPR000225 GO:0005515
Amo05g4623 715 SMART arm_5 563 605 IPR000225 GO:0005515
Amo05g4623 715 SMART arm_5 418 458 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4623 Amo-Chr5 119175369 119178005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4623 15 698 U-box Gene Family AT1G10560 38.252 1.93e-155 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4623 - - adu:107491382 1306.2