Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4616 ATGGCCGTTAGGGGCGTCAATTTCCAGTGGTACGATGGGTTCTTCCTATCCATGCTCGCCACCAGCGTAGTTGTTGTGGCAATCAGTTGGAAGCGCTACCAATCTTGTAGCTACCCTTTGCATCTATGGATTATGATTGATTACACTGCTGTGTTTACTTTCCGGCTTTTGATGTTTGTTGACAATGGACTTGCTTCTGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTGGTTGTTCTTTCAATCCTTGCATTGCTTCTCTATCCATTTCTTTGGGTTTGGACTATAATTGGTTCTCTGTGGTTCATCAGTTCCAAGACTTGTTTGAATGGAGATGGTAAAAAATATGGCTTTCTCATCTGGTTACTTTTTAGCTACTGTGGACTCATTTGTATTGCTTGCATGTCAATGGGGAAGTGGTTGACACGAAGACAAGCACATCTATTACGTGCCCAACAGGGTATTCCTATATCTGAATATGGGGTTCTAGTTGAAATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAATCAAGGGGCATGAACCAAGATGCTGCTGCATATCATCCTGGACTTTACCTAACTCCAGCTCAGCGAGAAGCAGTCAAAGCTTTAATTCAGGAACTCCCAAGGTTCAGCCTAAAGGCTGTTCCAACTGACTGCAGTGAATGCCTCATCTGCTTAGAAGAGTTCCGTGAAGGCAATGAGGTTCGTGGTCTTCCTTGCGCTCACAATTTTCATGTTGAATGCATCGACGAATGGCTTCAGCTGAATGTGAAATGTCCTCAGTGTCGTTGCTCGGTTTTTCCAAATCTTGATCTTAGTGCTCTGTCCAATATTCGTTCTGAATATCAGCAGTCTTCTGAGAGTAGTGTTGGAACATCAACCAGATATGTGCAACTACAACCTTCTAGCCAGAGTTACCTGTTGAGATTACAAGGACTTGTCCACCCAGTGCATGTTGAAATTACAGGGCCAAATGGGGAGACAGACAACGCGTTAGAAAATGCCGAAAATGGTGTTGTACCTGGTACAACAAGAAATGTGTCTAACTTGTGA 1092 0.4405 MAVRGVNFQWYDGFFLSMLATSVVVVAISWKRYQSCSYPLHLWIMIDYTAVFTFRLLMFVDNGLASGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWVWTIIGSLWFISSKTCLNGDGKKYGFLIWLLFSYCGLICIACMSMGKWLTRRQAHLLRAQQGIPISEYGVLVEMIRVPDWAFEAAGQESRGMNQDAAAYHPGLYLTPAQREAVKALIQELPRFSLKAVPTDCSECLICLEEFREGNEVRGLPCAHNFHVECIDEWLQLNVKCPQCRCSVFPNLDLSALSNIRSEYQQSSESSVGTSTRYVQLQPSSQSYLLRLQGLVHPVHVEITGPNGETDNALENAENGVVPGTTRNVSNL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4616 363 Pfam Ring finger domain 234 276 IPR001841 -
Amo05g4616 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 - -
Amo05g4616 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Amo05g4616 363 SUPERFAMILY RING/U-box 216 284 - -
Amo05g4616 363 SMART ring_2 235 275 IPR001841 -
Amo05g4616 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Amo05g4616 363 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Amo05g4616 363 CDD RING-H2_RNF111_like 234 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4616 Amo-Chr5 119011503 119016300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4616 58 361 C3H Transcription Factor Family AT3G47990 72.222 5.77e-157 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4616 K16284 - gmx:100812016 623.239