Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4579 ATGGAGATTCAGCAGACCCTAAAGCTCATGGTCCACCACCATAACAGAGGAAAGGAAAACAACACACCAAAGCTGAAATGGAGGAAAATTTTCACTCTCCAACGATCACCGCCGTCATCAAAACCCATCCAAACTCCACCGCCGGAAGAGTTCATCTGCCCAATCTCCGGTAKTCTAATGGCTGACCCRGTGATCGTATCTTCCGGTCACTCCTTCGAACGAGCGTCSGTACAATCATGCAAYGATCTCAACTTTACCCCTCAACTCTCCGATGGAACCACCCCTGATTTTTCCACCGTGATCCCCAACCTCGCCCTCAAATCCGCCATCTCCAAATGGTGCCACGCGTCATCCACCCTCCTCCCTCAACCCCCACACCGGTCCCTCACCGACAACCTCGTACGGACCCTCATTTTCTCATCTTCCTCCCGCAAAAACAACGCAAACGAGTTAGTGGGAGAGAGAATGCTAACAGCGAACCCTTCTTGTTGTTCTTCTTCTTCCTCCGTTGAGTCTATTGCCACGTCAGCATCGAGCTCCACCCCACCCGCTCAACTTACTGCAAAACCAAGCTTCTGCTACTCTTCACCTTCTTCCTCCGAACTCGAACCAACAACCCCAGAGGCCGAAGAATTCATCTCGAAGCTTCGGAGCAATCAAGTCTTCGTAATCGAAGAATCTCTGCAGAATCTGAGGAAGCTCACTAGAACTAATGAGGACTCAAGGATCACACTCTGCACCCAAAGGATGCTTTCGTCTTTGCGTGGCCTCGTTGCTTCGAAGTATAAAATGGTTCAAGTGAATGCCGTCGCATGTGTCGTGAACCTCTCTCTGGAGAAAATGAACAAGGTGAGGATCGTACGGTCAGGGTTAGTTCCGCCATTGATAGAAGCTTTGAGGATTGGATCCCCTGAGGCGCAGGAACACGCTTCCGGTGCGCTCTTCAGTCTAGCGCTTGAAGACGATAATAAAACCGCGATTGGGGTTCTCGGAGCTCTTCCACCGTTGATTCACGCGCTTCGAGTTGGGACTGAGCGGACTCGGCATGACTCGGCCTTGGCGCTTTACCATTTGTCGATGGTCCAAAGTAACAGAACCAAATTGGTTAAGATTGGATCGGTTCCGGTTTTAATTGGGATGGTTAAGTCTGGTCAGATGACGGGTCGGGTTTTGATGATTTTGGGCAATTTGGGTTGTGGGCCGGATGGGCGGGCTGCAATGTTGGATGTGGGTATGGTTGAATGTTTGGTCGGGTTGTTGGCTGGGTCCGAGTCGGTTCATGGATCAATAAAGGAGAGCTGTGTGGCGGTGCTATACGTGTTGAGTCACGGAGGGTTGAGGTTTAAGGCCGTAGCGAAGGCGGCAGGAGTGGTGGAGGCGCTCGAGAAGGCAGAGAAGGAGGTGGGGAGTCATCGAGCGAAGGAAAAGGCAATGAGGGTTTTGGAGATGATGAAGGGCAAAGAGGACGATGAGGAGGAAGAGGTGGATTGGGAGGAGCTGCTCGACTCCGGTCTAGGAAGCCGGAGTCACAACTACCATGATGGCGAGTTTGCCGGGCTCAATGGGACGACCTCAATCCTCTGA 1584 0.5183 MEIQQTLKLMVHHHNRGKENNTPKLKWRKIFTLQRSPPSSKPIQTPPPEEFICPISGXLMADPVIVSSGHSFERASVQSCNDLNFTPQLSDGTTPDFSTVIPNLALKSAISKWCHASSTLLPQPPHRSLTDNLVRTLIFSSSSRKNNANELVGERMLTANPSCCSSSSSVESIATSASSSTPPAQLTAKPSFCYSSPSSSELEPTTPEAEEFISKLRSNQVFVIEESLQNLRKLTRTNEDSRITLCTQRMLSSLRGLVASKYKMVQVNAVACVVNLSLEKMNKVRIVRSGLVPPLIEALRIGSPEAQEHASGALFSLALEDDNKTAIGVLGALPPLIHALRVGTERTRHDSALALYHLSMVQSNRTKLVKIGSVPVLIGMVKSGQMTGRVLMILGNLGCGPDGRAAMLDVGMVECLVGLLAGSESVHGSIKESCVAVLYVLSHGGLRFKAVAKAAGVVEALEKAEKEVGSHRAKEKAMRVLEMMKGKEDDEEEEVDWEELLDSGLGSRSHNYHDGEFAGLNGTTSIL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4579 527 SUPERFAMILY RING/U-box 35 121 - -
Amo05g4579 527 Pfam U-box domain 48 116 IPR003613 GO:0004842|GO:0016567
Amo05g4579 527 ProSiteProfiles U-box domain profile. 46 120 IPR003613 GO:0004842|GO:0016567
Amo05g4579 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 290 327 IPR000225 GO:0005515
Amo05g4579 527 SUPERFAMILY ARM repeat 210 488 IPR016024 -
Amo05g4579 527 SMART Ubox_2 50 113 IPR003613 GO:0004842|GO:0016567
Amo05g4579 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 121 IPR013083 -
Amo05g4579 527 SMART arm_5 238 278 IPR000225 GO:0005515
Amo05g4579 527 SMART arm_5 320 360 IPR000225 GO:0005515
Amo05g4579 527 SMART arm_5 400 443 IPR000225 GO:0005515
Amo05g4579 527 SMART arm_5 279 319 IPR000225 GO:0005515
Amo05g4579 527 Coils Coil 474 494 - -
Amo05g4579 527 PANTHER U BOX DOMAIN-CONTAINING 24 511 - -
Amo05g4579 527 Gene3D - 204 483 IPR011989 -
Amo05g4579 527 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 24 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4579 Amo-Chr5 118446498 118448658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4579 1 521 U-box Gene Family AT5G40140 52.166 1.41e-168 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4579 - - lja:Lj2g3v1020040.1 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4579 05 118446498 118448658 Amo15g1582 15 113142210 113144569 hybridization
Amo05g4579 05 118446498 118448658 Amo14g3572 14 139766359 139770584 PCT
Amo05g4579 05 118446498 118448658 Amo04g2647 04 99567245 99571404 PCT