Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4576 ATGGCAAAGGTGTACAACTTGTTCCTTTTGTTGTGTTTTGTTGCTGTGATACCAACCTTGCATGCCAATATCTTAGCGAATACTACGTATGCGAAACAACATATCACAACAATTGACAATGAATATTGGAAAGAAAAGGCAGCAATTGCTAGAAAAATGAGTGAAGAAGCATATTTTCCTGATCCGCATGAACTTTCCAGAAATTTTACCTCTCTTATTACCGAAGACATAGCTGGTAACAACCATGTAAGAAGGAACTTGAATGGTCAAAGGGCAGGAGTTGCATGTGAGGCAACCAATAACATTGATAGATGTTGGAGGTGTGACCCCAATTGGGCAGATAATCGCCAAAAACTTGTAAATTGTGTTCAAGGTTTTGGAAGAAAAACTACTGGAGGAAAGGGYGGTCCAATCTACYTAGTTACTAGTCCTGCTGACAATGARATGGTTAATCCAAAACCAGGTACCCTTCGCCATGCAGTCACAAGAGATGGACCTTTGTGGATTATCTTTGCTCGTAGCATGAATATTAGACTCAACCAAGAGCTCATGGTGTCTAGTAACAAGACAATTGACGGAAGAGGAGTTGATATCTACATTACTAAGGGTGCAGGCATCACCCTCCAATACGTCAGTAATGTCATCATCCATGGAATCAAGATTCATGATATTGTTCCCGGTACCGGTGGACTTATTAGGGATTCTGAGAGCCATTTTGGGTTTAGGACACGCAGTGATGGTGATGGAATCTCTATCTTTGGTGCCAGCAATATTTGGATTGACCATGTTTCCATGAGAAAATGCTCTGATGGTCTTATTGACGCCATTATGGGATCCACTGCTATTACCATCTCTAATAGTCATTTCACAGACCATAATGACGTGATGCTCTTTGGTGCCAATGACCAACACACAATTGACAAGGTGATGCAAATCACCCTAGTTTTCAACCACTTTGGCAAGAGATTAATCCAAAGAATGCCAAGGTGCAGATTTGGATTTGTTCATGTTGTCAACAATGATTATACTCATTGGGAAATGTATGCCATTGGTGGTAGCAGCAAACCTACGATTATTAGTGAAGGAAATCGGTTCGTGGCTCCTGATAATAACAATGCTAAAGAGGTCACGAAGAGAGTAACCAATGATGATTGGAAGAATTGGCAATGGAGATCAATCAACGATGCGTTTGTTAATGGAGCATTTTTCGTACAATCTGGACCTGAACTCGTAGACAGGCCATTCTCAAGCAAGGACATGATTGCAGGAAAAGATGGTTCATACGTGCAAAGACTTACTTCTTTTGCTGGCTCCCTTAAATGTAGAGTTGTATGTTTTGCAGATTATCTTCTCTTTCGGTGCATTTCGTATTCAAGTATACGTGGATTTAGATTTCGTATTGGAGTCAACACTCTCTTTGAGCAGACTTGCTTGGGAGCATTAGATGACATTTATACAGAGGTAACAGTCTCTAAATCTGATAAGTCAAGATATCAAACAAGGAAGGGTAAAATATGTACCAACGTCCTAGAAGTGTGTAATCGAGATATGAGCTTTGTTTATGTACTTAATGGATGGGAGGAATCAGCATCTGATTCAAGAATACTTCGAGATGCAATTACTCATGGTTACACAAATGGTCCTAGGTTCCTAGCACCATATAGAGGCACTCGCTATCATGTTAGAGAGTGGGCTCAAGGAGCACATGCATCTCGTAATTACCAGGAATATTTTAATAGGAAGCATTCTTCTACTAGGAATGTCATAGAGCAATGCTTTGGGTTACTCAAGAAGAGATGGTCAATTTTAAGAAGTAGTCCTAGCTTTTACCCTATAAAAATGTAA 1845 0.4 MAKVYNLFLLLCFVAVIPTLHANILANTTYAKQHITTIDNEYWKEKAAIARKMSEEAYFPDPHELSRNFTSLITEDIAGNNHVRRNLNGQRAGVACEATNNIDRCWRCDPNWADNRQKLVNCVQGFGRKTTGGKGGPIYLVTSPADNEMVNPKPGTLRHAVTRDGPLWIIFARSMNIRLNQELMVSSNKTIDGRGVDIYITKGAGITLQYVSNVIIHGIKIHDIVPGTGGLIRDSESHFGFRTRSDGDGISIFGASNIWIDHVSMRKCSDGLIDAIMGSTAITISNSHFTDHNDVMLFGANDQHTIDKVMQITLVFNHFGKRLIQRMPRCRFGFVHVVNNDYTHWEMYAIGGSSKPTIISEGNRFVAPDNNNAKEVTKRVTNDDWKNWQWRSINDAFVNGAFFVQSGPELVDRPFSSKDMIAGKDGSYVQRLTSFAGSLKCRVVCFADYLLFRCISYSSIRGFRFRIGVNTLFEQTCLGALDDIYTEVTVSKSDKSRYQTRKGKICTNVLEVCNRDMSFVYVLNGWEESASDSRILRDAITHGYTNGPRFLAPYRGTRYHVREWAQGAHASRNYQEYFNRKHSSTRNVIEQCFGLLKKRWSILRSSPSFYPIKM* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4576 614 Gene3D - 99 440 IPR012334 -
Amo05g4576 614 Pfam DDE superfamily endonuclease 491 605 IPR027806 -
Amo05g4576 614 Pfam Pectate lyase 182 365 IPR002022 -
Amo05g4576 614 Pfam Pectate lyase, N terminus 35 87 IPR007524 GO:0030570
Amo05g4576 614 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Amo05g4576 614 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Amo05g4576 614 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Amo05g4576 614 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Amo05g4576 614 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Amo05g4576 614 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Amo05g4576 614 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Amo05g4576 614 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Amo05g4576 614 PANTHER PECTATE LYASE 7 443 - -
Amo05g4576 614 SMART amb_all 174 371 IPR002022 -
Amo05g4576 614 SUPERFAMILY Pectin lyase-like 100 438 IPR011050 -
Amo05g4576 614 PANTHER PECTATE LYASE 18-RELATED 7 443 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4576 Amo-Chr5 118404581 118409281 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4576 5 443 Polysaccharide Lyase AT1G14420 56.018 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4576 K01728 - gmx:100810857 638.647