Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4574 ATGGCAAAGGTGTACAACTTGTTCCTTTCTTTGTGTTTGGCTGCCATAATACCAGCCTTCCAAGCCAATATCTTAGATAATACTACATATGCGAAACAACATATCAACTTGGTTGATAATGAATACTGGAAAGAAAGGGCAATAATTGCTAGGAAGCTTAGCGAAGAAGCATATTTTCCTGATCCACATGCACTTTCTAGAAACTTCTCCTCTATTATTATTGAAGACATAGCTGGTAGCAAGCATGTAAGAAGGAACTTGAATGGTCAAAGGGCAGGAGTTGCATGTGAGGCAACCAATAACATTGACAGATGTTGGAGGTGTGATCCCAATTGGGCAGATAATCGCCAGAAACTTGTAAATTGTGTTCAAGGTTTTGGAAGAAATACTACTGGAGGAAAGGGAGGTCCAATCTACATTGTTACTAGTCCTGCTGACAATGACATGGTTAATCCAAAACCCGGTACCCTTCGCCATGCAGTCACAAGAGATGGACCTTTGTGGATTATCTTTGCTCATAGCATGAATATTAGACTCAATCAAGAGCTCATGGTGTCTAGTAACAAGACTATTGATGGAAGAGGAGTTGATATCTACATTACTAAGGGTGCAGGCATCACTCTCCAATACGTCAATAATGTCATCATCCATGGAATCAAGATTCATGACATTGTTCCCGGTACCGGTGGACTTATTAGGGATTCTGAGAGTCATTATGGGTTTAGGACACGCAGTGATGGTGATGGAATCTCCATCTTTGGTGCTAGCAATATTTGGATTGACCATGTTTCCATGAGAAAATGCTCTGATGGTCTTATTGATGCCATTATGGGATCTACAGCTATTACCATCTCTAATAGTCATTTCACAGACCATAATGACGTGATGCTCTTTGGTGCCAATGACCAACACACAATTGACAAGGTGATGCAAATCACCCTAGTTTTCAACCACTTTGGCAAGAGATTAATCCAAAGAATGCCAAGGTGCAGATTTGGATTTGTTCATGTTGTCAACAATGATTATACTCATTGGGAAATGTATGCCATTGGTGGTAGCAGTAAACCTACGATTATCAGTGAAGGAAATCGGTTCGTGGCTCCTGATAATAACAATGCTAAAGAGGTCACGAAGAGAGTAACCAATGATGATTGGAAGAATTGGCAATGGAGATCAATCAACGATGAGTTTGTTAATGGAGCATTTTTCGTACAATCTGGACCTGAAGTAGTAAAGAGGCCATTCTCAAGCAAGGACATGATTGCAGGAAAGGATGGTTCATACGTGCAAAGACTTACTTCCTTTGCTGGCTCCCTTAAATGTAGAGTTGGTCAACCTTGCTAG 1344 0.407 MAKVYNLFLSLCLAAIIPAFQANILDNTTYAKQHINLVDNEYWKERAIIARKLSEEAYFPDPHALSRNFSSIIIEDIAGSKHVRRNLNGQRAGVACEATNNIDRCWRCDPNWADNRQKLVNCVQGFGRNTTGGKGGPIYIVTSPADNDMVNPKPGTLRHAVTRDGPLWIIFAHSMNIRLNQELMVSSNKTIDGRGVDIYITKGAGITLQYVNNVIIHGIKIHDIVPGTGGLIRDSESHYGFRTRSDGDGISIFGASNIWIDHVSMRKCSDGLIDAIMGSTAITISNSHFTDHNDVMLFGANDQHTIDKVMQITLVFNHFGKRLIQRMPRCRFGFVHVVNNDYTHWEMYAIGGSSKPTIISEGNRFVAPDNNNAKEVTKRVTNDDWKNWQWRSINDEFVNGAFFVQSGPEVVKRPFSSKDMIAGKDGSYVQRLTSFAGSLKCRVGQPC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4574 447 Pfam Pectate lyase, N terminus 40 87 IPR007524 GO:0030570
Amo05g4574 447 PANTHER PECTATE LYASE 18-RELATED 7 447 IPR045032 GO:0030570
Amo05g4574 447 Gene3D - 99 440 IPR012334 -
Amo05g4574 447 SUPERFAMILY Pectin lyase-like 100 438 IPR011050 -
Amo05g4574 447 PANTHER PECTATE LYASE 7 447 - -
Amo05g4574 447 SMART amb_all 174 371 IPR002022 -
Amo05g4574 447 Pfam Pectate lyase 182 365 IPR002022 -
Amo05g4574 447 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Amo05g4574 447 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Amo05g4574 447 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Amo05g4574 447 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Amo05g4574 447 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Amo05g4574 447 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Amo05g4574 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Amo05g4574 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4574 Amo-Chr5 118383222 118385735 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4574 7 447 Polysaccharide Lyase AT1G14420 57.424 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4574 K01728 - gmx:100810857 644.425