Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4545 ATGCACCAAAATTGGATTTTTGAGCACACCCATTTGAAGATGGCATGGATTCACCACCATATTCAACAAAAAGATGGTTACTTGAGCTACTACTACCCTCCACCACCACCACTACCACCACTATTACCGCCACCATATTTGTCCACACCTTCAACATCTTCTTCAGCTTCATCTTCATCTTCATCTTCATCACCATCTTCTGGTACTAGGATTAGTCCTGCTGTTCTTTTCATAATAGTAATTCTTGCAGTTTTATTCTTCATCTCTGGTGTCCTCCATCTGCTTGTTAGATTTCTCATGAAGCACCCTTCTTCATCTGCATCTGCTCAATCTAATAGAAACCATGAGATTTCAACCTCTGATGCACTACAAAGACAATTACAGCAGCTTTTCCATCTGCATGATTCTGGTTTGGATCAGGCCTTCATCGACGCTCTTCCGGTTTTTCAGTATAAGGAGATTGTGGGGCTGAAGGAGCCATTTGATTGTGCTGTTTGTCTGTGTGAGTTTTCTGAGAAGGATAACCTCAGGTTGTTGCCTATGTGCAGCCACGCCTTTCACATAAGTTGTATAGACACATGGCTTCTTTCGAATTCCACTTGCCCTCTTTGTAGAGGGACACTCCTTACTCCGGGGTTTTCGATGGAGAATCCAATGTTTGATTTTGATGATATGAGGGAAGATGAAGGGTGGCCTTGTGATGGTGAAAATGGATTTACAAATAGGCAGAAGAAAGCTGTGGTTGAAGAAATCAATGATGAGAAAAGGGGAATTTTCCCCGTAAGGCTCGGTAAATTCCGGAAGATGGATGTGGAGACTGGTGAGGAGGGTGTAGTAGTAGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTTTTCAATGGGATCTTATCAGTATGTTGTGGCCAATTCAGAACTCAGGATAGCCTTGAATCATGACCGGAGTGATCACAAATTGAGGCTTGCTGCTGAAGGAAAACAACATTCTGAGAAGGCTGCTTTGGAAGGGGATATGGATGCAAAGAAATTAGGAGTATACTCATGGTCGAATTAG 1059 0.4268 MHQNWIFEHTHLKMAWIHHHIQQKDGYLSYYYPPPPPLPPLLPPPYLSTPSTSSSASSSSSSSSPSSGTRISPAVLFIIVILAVLFFISGVLHLLVRFLMKHPSSSASAQSNRNHEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDNLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGFSMENPMFDFDDMREDEGWPCDGENGFTNRQKKAVVEEINDEKRGIFPVRLGKFRKMDVETGEEGVVVGETSSSNLDARRCFSMGSYQYVVANSELRIALNHDRSDHKLRLAAEGKQHSEKAALEGDMDAKKLGVYSWSN* 353
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4545 352 MobiDBLite consensus disorder prediction 42 68 - -
Amo05g4545 352 CDD RING-H2_PA-TM-RING 162 205 - -
Amo05g4545 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 210 IPR013083 -
Amo05g4545 352 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Amo05g4545 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 45 347 - -
Amo05g4545 352 SUPERFAMILY RING/U-box 142 211 - -
Amo05g4545 352 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 45 347 - -
Amo05g4545 352 MobiDBLite consensus disorder prediction 48 68 - -
Amo05g4545 352 Pfam Ring finger domain 162 205 IPR001841 -
Amo05g4545 352 SMART ring_2 163 204 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo05g4545 Amo-Chr5 118019295 118020822 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4545 60 303 C3H Transcription Factor Family AT2G18650 44.610 1.58e-54 182
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4545 - - adu:107490806 488.034
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4545 05 118019295 118020822 Amo15g1619 15 114081557 114083861 hybridization