Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4528 ATGGAATCTGGTGGGAGGCTTTTCTTTGATCCATCTGCTTGTAGGGGGAACAACAACATGCTCTTCCTTGGCACTACTGCTGATCTCGCTTTTCGAGGAAGGTCGATCCTGAGCATGGATGAAAGCTCAAAGAGGCGACCTTTCTTCAGCTCACCGGATGATCTGTTTGATGATGAGTACTATGAGGAGCAGCTTCCAGAAAAGAAGCGCCGCCTCACTTCCGAACAGGTCAATCTGTTGGAGAAAAGCTTCGAGGAAGAGAACAAGCTGGAGCCAGAGAGGAAAACCCAGCTGGCGAAGAAGCTGGGGTTGCAGCCGAGGCAGGTGGCAGTGTGGTTCCAGAACCGCAGGGCTCGGTGGAAGACCAAGCAACTTGAAAGGGATTATGATGTTCTCAAGGCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTGTGAAGGAGAATGAAAAGCTCAAATCTGAGGTGGTATCCTTGAATGAAAAGCTTCAATTGCAAGCTAAAGATATGCCAGGGGAGCCAATATCGGACAACAAAGCCGAACCGCTTCCAGTTGAGATAGCTCAAATCATCAGCATGAAAGTTGAGGATCGGCTGAGCACTGGGAGTGTTGGAAGCGCCGTGGTTGATGAGGGTAGTAGTCCACAGCTTGTTGTTGAGAGTGTTGATTCATACTTTCCTGCTGAGAACTATGGCGGCAATAGCGGCAATAGCATGGCCCCAATTGAGAGGGTTCAGTCAGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTATCTTCTCAGATGTTTTTGTTGCTGCTGAAGCTGAGCAACAGAACCAAGAAGAAGGGGAGAGATTCGCATCCATGGAAGACACCCAAACCAGGACAATCTGCGCATGGCAGATAACAGATCCAAATGATTGGCAGAGAAGACGCAGAAGCAGCCACTGCTTCATGTGA 945 0.4899 MESGGRLFFDPSACRGNNNMLFLGTTADLAFRGRSILSMDESSKRRPFFSSPDDLFDDEYYEEQLPEKKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSTYDSIVKENEKLKSEVVSLNEKLQLQAKDMPGEPISDNKAEPLPVEIAQIISMKVEDRLSTGSVGSAVVDEGSSPQLVVESVDSYFPAENYGGNSGNSMAPIERVQSEEEDGSDDGRSIFSDVFVAAEAEQQNQEEGERFASMEDTQTRTICAWQITDPNDWQRRRRSSHCFM* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4528 314 Pfam Homeobox associated leucine zipper 123 165 IPR003106 GO:0006355|GO:0043565
Amo05g4528 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 2 268 - -
Amo05g4528 314 CDD homeodomain 68 124 IPR001356 GO:0003677
Amo05g4528 314 MobiDBLite consensus disorder prediction 231 258 - -
Amo05g4528 314 Coils Coil 267 287 - -
Amo05g4528 314 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Amo05g4528 314 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Amo05g4528 314 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Amo05g4528 314 SMART HOX_1 66 127 IPR001356 GO:0003677
Amo05g4528 314 Coils Coil 143 170 - -
Amo05g4528 314 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Amo05g4528 314 SUPERFAMILY Homeodomain-like 57 125 IPR009057 -
Amo05g4528 314 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Amo05g4528 314 Gene3D - 61 130 - -
Amo05g4528 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 268 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4528 Amo-Chr5 117756036 117759204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4528 1 282 Homeobox Transcription Factor Family AT3G01470 58.188 6.24e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo05g4528 Homeodomain 7.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4528 K09338 - gmx:100797836 389.423