Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4521 ATGGCTAACTTGGAAATAGAAGAGGAGCCAATGCTGTCACCTCCACAACGATCTCATGGACTCCAGGGTTCGGATTTTCGGGCCCGAAGCAGGTCTATGCACATTCCCATGGTCTCCCACCGAGAAGCAACTCGTACACTTGATAGTGTGAAAACCTTTCCCCAGAAGAAGAGTGCTTCATCGTCATTCTATTCCACTGCCACTCATGAAACTCTACATCTTTCTTCGTCCCGCCGCGGCGGTGGCCCACTTAGATGGCATCGTGCTATGACAGGAAGGCTTCAATATAATCCTCTTCAAGCAGAGTTTGATAGTATTTTTGAGGGTTCTGCTTGGAGAGTCCCTTCATTCTGCTCTTCATGTGTTCCTGGAGTTATACATCCTGACAGTGTAAAACAATGGAACAAGATTATAGCTATTTTAAGCTTGGRGGCAATATTTTTGGATCCATTATTTTTCTTCTTATTGTATGTTGAAAAGCATTTGAATTGCATTGTTATCAGTRGGACAATGACGAGACCACTTYTTTTACTTAGAAGCATAAATGATTTAGTATATTTCATGAACATGCTTCTCCAGTTTAGGTTGGCTTATGTTTCTGCCGGGTCAAGGTTAAGGGGTACTGATTTAATTGATGATCCAAAGAAAATTGCTCGACATTACCTGACTAGTTATTTCTTTCTTGATTTGTTTATTGCACTTCCTCTACCACAGATAATAGTATTGTTTGTGCTGCCAAGATATTTCGGAGCGAGTCATGCTGAGAGTCTTTTATGTGGAGTGATCCTTGTGCAGTATATCCCCAGGTTATTCCGATTTTTGCCTCTGCTAATTGTCCAGTCTCCAGAAGGATTCATATTTGAGTCAGCATGGGCAAATTTTTTTATAAATATCCTCATTTTTATACTATCTGGACATGTCGTTGGCTCTTGTTGGTACCTCTTTGGTTTGCAGAGGGTTAATCAATGTTTGCGAGATGCCTGCCATAATTCAGTTGTTACTCAATGCATGAAGATTATTGATTGTGGGTATGACCGTTTCTCACACTATACATCATCAGATTCAGAAATGTGGAGAAACAATGCAAATGCAACTGCTTGTTTGAATTCCTCTTCTGGTGCTTTTGATTATGGGATATACGCCAATGTTGTACAACTTACTACGCATCCTAAAATAGTCAAGAAGTATCTGTATGCACTGTATTGGGGCTTCCAACAAATCAGTACCCTTGCTGGTAATCAAACCCCTAGTGATTTTGAGTTCGAAGTCCTTTTCATAATGGCAATCACAGGAATAGGACTCTTGCTTTTTGCACTTTTGATCGGAAACATACAAAACTATCTTCAAGCTCTCGGTCAGAGGACACTAGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCAGTTTCACTTACCAGAAGATCTTAGAAGGAAAATAAGACATGTTGAACGGTATAATTGGGCTGCAACAATAGGGGTGAATGCGGAAATGCTTATGGAGAATATGCCAGAAGATCTCCAAAGAGACATAAGGCGTCATCTCTTCAGATTCATTAAGAGAGTTCGAATTTTTTCTATGATGGACGAGCCTATTTTAGATGCCATTTGTGAGAAGTTAAGACACAAGATATACATCAAAGGAAGCAATATCTTGTATAATGGTGGTCTAGTGGAGAAGATGGTGTTTGTTATGCATGGGAAATTGGAGAGCATCGAAGGAGAAGATGGAATTAGAATTAGCTTAACCCAAGGGGATGCTTGTGGTGAAGAACTCTTGCAGTGGTGTTTGGAGAATTCATTACTCTACACAGCAAGCAGAAAACCAGAAAAAGTCTTGCGTAGTGAAAGGACAGTAAGGGCCTTAACAAATGTGGAGGTGTTTTCACTCCGAGCTGATGACCTTGAAGAAGTAATAATTCGTTTCTCAAGATTATTTCAAAGACCACGTGTTCAAGCAGCCCTAAGGTATGAATCACCTTATTGGAGATCCCTTGCTGCAACACGGATTCAGATGGCGTGGCGAAACAGGAAGAACCGTTTAAATCGTAAGCGTGCTGCCTCACAAACAAATTAG 2082 0.4073 MANLEIEEEPMLSPPQRSHGLQGSDFRARSRSMHIPMVSHREATRTLDSVKTFPQKKSASSSFYSTATHETLHLSSSRRGGGPLRWHRAMTGRLQYNPLQAEFDSIFEGSAWRVPSFCSSCVPGVIHPDSVKQWNKIIAILSLXAIFLDPLFFFLLYVEKHLNCIVISXTMTRPLXLLRSINDLVYFMNMLLQFRLAYVSAGSRLRGTDLIDDPKKIARHYLTSYFFLDLFIALPLPQIIVLFVLPRYFGASHAESLLCGVILVQYIPRLFRFLPLLIVQSPEGFIFESAWANFFINILIFILSGHVVGSCWYLFGLQRVNQCLRDACHNSVVTQCMKIIDCGYDRFSHYTSSDSEMWRNNANATACLNSSSGAFDYGIYANVVQLTTHPKIVKKYLYALYWGFQQISTLAGNQTPSDFEFEVLFIMAITGIGLLLFALLIGNIQNYLQALGQRTLEMQLRGRDVEQWMSQFHLPEDLRRKIRHVERYNWAATIGVNAEMLMENMPEDLQRDIRRHLFRFIKRVRIFSMMDEPILDAICEKLRHKIYIKGSNILYNGGLVEKMVFVMHGKLESIEGEDGIRISLTQGDACGEELLQWCLENSLLYTASRKPEKVLRSERTVRALTNVEVFSLRADDLEEVIIRFSRLFQRPRVQAALRYESPYWRSLAATRIQMAWRNRKNRLNRKRAASQTN* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4521 693 CDD CAP_ED 526 641 IPR000595 -
Amo05g4521 693 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 100 688 - -
Amo05g4521 693 Gene3D Jelly Rolls 524 646 IPR014710 -
Amo05g4521 693 Gene3D - 136 451 - -
Amo05g4521 693 SUPERFAMILY cAMP-binding domain-like 453 650 IPR018490 -
Amo05g4521 693 ProSiteProfiles cAMP/cGMP binding motif profile. 526 650 IPR000595 -
Amo05g4521 693 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 100 688 - -
Amo05g4521 693 SUPERFAMILY Voltage-gated potassium channels 131 449 - -
Amo05g4521 693 SMART cnmp_10 526 659 IPR000595 -
Amo05g4521 693 Pfam Ion transport protein 134 455 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo05g4521 693 Gene3D Helix hairpin bin 455 518 - -
Amo05g4521 693 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4521 Amo-Chr5 117577151 117586743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4521 99 602 Ion Channels AT3G17700 56.564 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4521 K05391 - gmx:100781973 743.036