Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4508 ATGTACTACATATTAAATATATCATCATCGATCAAAATTATGGCAGCAAGCACAGCCAGCATCCCATCTCACATAAAAGCTTGGGTCTACAATGAATATGGAAACATTGAAGAGACTCTCAAGCTTGACTCAAACGTAGCTTTACCACAACTCAAGGATGATCAGGTTCTCATCAAGGTTGTGGCTGCAGCCCTTAACCCTGTTGATTATAAGAGGGCCCTTGGATTTTTCAAGGACTCTGACTCTCCATTCCCAACTGCTCCAGGGTATGATGTGGCTGGTGTGGTGGTGAAAGTGGGAAGCGAAGTGAAGAAATTCAAGGTTGGAGATGAAGTTTATGGTGATATAAATGAATATGCTGTGAATAATCCAAAAGCTATTGGGTCAGTGGCAGAGTATACTAGTGCTGAAGAGAAAGTGTTGGCTCACAAACCCTCTAATTTGAGCTTTATTGAAGCTGCTAGCCTCCCTGCAGCAATCATCACTGCTTATCAAGGTCTTGAGAGAGTTGAATTTTTTGCTGGAAAATCTATACTTGTTCTTGGAGGTGCTGGTGGAGTTGGAAGTCTTGTTACCCAGCTAGCCAAGCAAGTTTTCGGTGCAGCTAAGGTAGCAGCTACCGCTAGTACCGGGAAACTGGAGCTGTTAAGGAAGTTAGGAGTAGACTTGCCAATTGATTATACAAAGGAGAATTTTGAGGAGCTGCCACAAAAGTTTGATGTTGTGTATGATACAGTAGGACAAACTGACAAGGCATTGAAGGCAATTAAAGAAGGGGGAAAAGTAATAACAATAGCAGGACCTGCAAGTCCACCTGCAATATGGTTCTTTCTCCATTCAGATGGTGCAGTCTTGGACAAACTCAAACCTTATTTAGACAGTGGCAAGGTGAAGCCAGTGTTGGATCCAAAGAGCCCTCTCCCATTTTCTAAGGCAATAGAAGCATTTTCCTACCTCAAGACCAATAGAGCCACTGGAAAATTGAGTGAGAATGACACTCTTCATATACCCTCTTCAGTTTCTAAGCTTTTCTGCTCAACCAAGTTCATGGCAGCAAGCACGACTAGCATCCCATCTCACATAAAAGCCTGGGTCTACAATGAATATGGGAACATTGAAGAGACTCTCAAGTTAGACCCAAACATAGCTACGCCACAAATCAAGGATGACCAAGTTCTCATCAAGGTTGTGGCTGCAGCCCTTAACCCTGTTGATTATAAGAGGGCCCTTGGACTTTTTAAAGATACTGACTCTCCATTCCCAACAGCTCCAGGGTATGATGTTGCTGGTGTGGTGGTGAAAGTGGGAAGCAAAGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGATATCAATGAGAATGCTGGGAATCCAAAGGCTATTGGGACGTTAGCAGAGTATACTAGTGCCGAAGAGAAGGTGTTGGCACACAAACCCTCTAATTTGAGCTTTATTGAAGCTTCTAGCCTCCCTTTAGCAATCATCACTGCTTATCAAGGAATCGAGAGAGCTCAATTTTCTTCTGGAAAATCTATTCTTGTTCTTGGAGGTGCTGGTGGAGTTGGAAGTCTTGTTATTCAGTTAGCCAAGCAAGTTTTTGGTGCATCTAAGGTAGCAGCTACTGCTAGTACTGCAAAATTGGAGCTGTTAAGGGAGTTAGGAGCAGACTTGCCTATTGATTATACAAAGGAGAATTTTGAAGAACTGCCAGAAAAGTTTGATTTTGTGTATGACACAGTAGGAGGACAAGTAATAACAATAGCAGGACCTGCAAGTCCACCTGCAATATGGTTCTTTCTCCATTCAGATGGTGCAGTCTTGGACAAACTCAAACCTTATTTAGACAGTGGCAAGGTGAAGCCAGTGTTGGATCCAAAGAGCCCTCTCCCATTTTCTAAGGCAATAGAAGCATTTTCCTACCTCAAGACCAATAGAGCCACTGGAAAAGTAGTTATACATCCAATCCCATAA 1974 0.4265 MYYILNISSSIKIMAASTASIPSHIKAWVYNEYGNIEETLKLDSNVALPQLKDDQVLIKVVAAALNPVDYKRALGFFKDSDSPFPTAPGYDVAGVVVKVGSEVKKFKVGDEVYGDINEYAVNNPKAIGSVAEYTSAEEKVLAHKPSNLSFIEAASLPAAIITAYQGLERVEFFAGKSILVLGGAGGVGSLVTQLAKQVFGAAKVAATASTGKLELLRKLGVDLPIDYTKENFEELPQKFDVVYDTVGQTDKALKAIKEGGKVITIAGPASPPAIWFFLHSDGAVLDKLKPYLDSGKVKPVLDPKSPLPFSKAIEAFSYLKTNRATGKLSENDTLHIPSSVSKLFCSTKFMAASTTSIPSHIKAWVYNEYGNIEETLKLDPNIATPQIKDDQVLIKVVAAALNPVDYKRALGLFKDTDSPFPTAPGYDVAGVVVKVGSKVKKFKVGDEVYGDINENAGNPKAIGTLAEYTSAEEKVLAHKPSNLSFIEASSLPLAIITAYQGIERAQFSSGKSILVLGGAGGVGSLVIQLAKQVFGASKVAATASTAKLELLRELGADLPIDYTKENFEELPEKFDFVYDTVGGQVITIAGPASPPAIWFFLHSDGAVLDKLKPYLDSGKVKPVLDPKSPLPFSKAIEAFSYLKTNRATGKVVIHPIP* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4508 657 Gene3D - 368 653 - -
Amo05g4508 657 Gene3D - 32 328 - -
Amo05g4508 657 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 16 328 IPR044626 GO:0016628
Amo05g4508 657 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 148 300 IPR036291 -
Amo05g4508 657 Pfam Alcohol dehydrogenase GroES-like domain 390 458 IPR013154 -
Amo05g4508 657 Pfam Alcohol dehydrogenase GroES-like domain 54 115 IPR013154 -
Amo05g4508 657 CDD MDR_like_2 362 653 - -
Amo05g4508 657 CDD MDR_like_2 26 328 - -
Amo05g4508 657 SUPERFAMILY GroES-like 22 182 IPR011032 -
Amo05g4508 657 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 352 657 IPR044626 GO:0016628
Amo05g4508 657 Gene3D - 167 281 - -
Amo05g4508 657 Gene3D - 502 604 - -
Amo05g4508 657 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 175 196 IPR002364 GO:0008270|GO:0016491
Amo05g4508 657 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 510 531 IPR002364 GO:0008270|GO:0016491
Amo05g4508 657 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 16 328 - -
Amo05g4508 657 Pfam Zinc-binding dehydrogenase 598 653 - -
Amo05g4508 657 Pfam Zinc-binding dehydrogenase 219 328 - -
Amo05g4508 657 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 483 589 IPR036291 -
Amo05g4508 657 Pfam Zinc-binding dehydrogenase 521 586 IPR013149 -
Amo05g4508 657 SMART PKS_ER_names_mod 34 328 IPR020843 GO:0016491
Amo05g4508 657 SMART PKS_ER_names_mod 370 653 IPR020843 GO:0016491
Amo05g4508 657 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 352 657 - -
Amo05g4508 657 SUPERFAMILY GroES-like 358 517 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4508 Amo-Chr5 117183393 117211923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4508 417 583 Monolignol Biosynthesis Gene Families AT1G72680 27.551 1.52e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4508 K18980 - gmx:100791274 492.656