Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4487 ATGGGTCAGGAATTTTCTCATGAAGGGGTTAATAGCGAGCATACATCATATGATCAGTATGAGCAGGAGGAAGAAAAACATGAGGAAGTTGATGTGGATTATATGGATGAGGATGACACAAATGTGGAACCAATGTTCGATTTTCACGGCTTCGATGAAGGGTATAACATTGACTCACTCGAAGACATTAGGATGATTGAATTTTGGAACATCGGGGATGAAGATGTATGTCATTTTCACTTTTCTGATGTCGACATTGCATTTGAGTTCTACAATAGATATGCAAGGACAAGAGGCTTTAGTGCTCGGAAGAACGGGACTAGGAAGAGTCGTGCGAGCGCACTTAAGTTGAAGAATTTTGTATGTCATCGTGAAGGATTTAGACCGCCAAATAATTACGGCATCGAAAACCTTAAGAGAAAACCTACACCCGAGACAAGGTGTGGCTGCAGTGCAATGATGGAGATTCGTGTAGATGCACCTAGTGGTCGTTGGTGGAAAGAGGTCCAGGCTGACCTCGCCTCTGTGAATGGGAGACCCAGTATGCAAACCTGTTTTCAACAGTTAGAGAGGAGTGCTGCCAATGTTTACAACCTATCAATATTTTATATGTTCCAACCAATCCTTATACGGGCTGCATCAATGAAGGTAATAAATATGAGGCAAACATGCTCTTATGTGATTTACTCTGTCGGTTTGGACCGAACGCCAAATGAGATGTGGCGTGTATTCTGTTGTGACATTGAGATGGAATTCAATTGTTCATGTATGAGAATAGAATCATTTGGCATACCTTGTGAACACATAGTTTGCGTCTTAGTGCATGAAGATATAAAAGAGTTGCCAGGGTCATTAGTCTTGCCTAGGTGGACCAAGACTGCCAAAGTTGGTTTGCAAAATGCGGTCGGATTTCATTGGGATTCTTTGATGCTTAGTCAATACGGTTGTTTGATGGATTGGTTTAGACAACTAGCCAACAATTTGAATAATTACCTATTTATGCACCTAGGAATACCTATTGCATTACGGACTTCCCAACCCTCGAAATTCACTGTGTCTTGTATACCACATTCTGCATACTTCTCTGATGATATTATTTCAGAAAGAGCCACTCCCTAA 1119 0.4129 MGQEFSHEGVNSEHTSYDQYEQEEEKHEEVDVDYMDEDDTNVEPMFDFHGFDEGYNIDSLEDIRMIEFWNIGDEDVCHFHFSDVDIAFEFYNRYARTRGFSARKNGTRKSRASALKLKNFVCHREGFRPPNNYGIENLKRKPTPETRCGCSAMMEIRVDAPSGRWWKEVQADLASVNGRPSMQTCFQQLERSAANVYNLSIFYMFQPILIRAASMKVINMRQTCSYVIYSVGLDRTPNEMWRVFCCDIEMEFNCSCMRIESFGIPCEHIVCVLVHEDIKELPGSLVLPRWTKTAKVGLQNAVGFHWDSLMLSQYGCLMDWFRQLANNLNNYLFMHLGIPIALRTSQPSKFTVSCIPHSAYFSDDIISERATP* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4487 372 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 164 300 IPR031052 GO:0006355
Amo05g4487 372 SMART 26again6 252 279 IPR006564 GO:0008270
Amo05g4487 372 MobiDBLite consensus disorder prediction 1 30 - -
Amo05g4487 372 PANTHER OS03G0181600 PROTEIN 164 300 - -
Amo05g4487 372 PANTHER OS03G0181600 PROTEIN 79 163 - -
Amo05g4487 372 ProSiteProfiles Zinc finger SWIM-type profile. 229 277 IPR007527 GO:0008270
Amo05g4487 372 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 79 163 IPR031052 GO:0006355
Amo05g4487 372 MobiDBLite consensus disorder prediction 1 16 - -
Amo05g4487 372 Pfam FAR1 DNA-binding domain 89 165 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4487 Amo-Chr5 116869466 116871589 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g4487 FAR1 4.2e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4487 - - aip:107641043 333.569