Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4482 AAGACCACTATTCTTCTGGTACCTCATCCCAGTTTTCCTCTAGAGGCATTTTCTTTTAAGCCTATTGTGGAGTTGCTTCGAGCTGACAAGATCGATGATTCAATACTCATAGATGTCATTGGTGAAGTTGTTGAAAAAGAGGATCCAAGAGAGTTGATTACCAGCAAAGGCAGAGAGACAAAGCACATGGTAGACCAAATTCTACCATATCTCGAGGGAGAAAGGGTGGAGCCTCTGATAGTTATAGCTCAATGCTTTAAACCGAGCAGGTGGAATGAAAAAACATCAGTGCAGAGTCACTTTGAGTATTCTAAGTTACGTATTAATCCTGATTTGGAAGAGGTTAGAGATTTCCATAACAGGAGGCTTTCTGAAAAACCGGCAAACTCGGCCAGAATTAGTCAAGTTTCATCCCATGGCCCGCGATCTGGTGCCGACGAGCTAAAAAAGGGAGATGTTGCTGTTAAAACTATAGAAGAAGCCATCAGCTCAACACAGGAAGGGCCTATATGGATTGCCGGTACAATAGTTTCAATTAACTCTGGCAAGGATGATTGGTATTACAAATCATGCCGAAAATGTCTAAAGAAAGTAGAAACCCCTATTGGAAACAGATATGAGTGTGGTAGATGTGGTCACACCCATGGAGCTGCATCACTTAGGTTCAAAGTTGAGGTGATGGCATGTGACAGAACGGGTAGCATAACATTGTTAATGTGGGATAGGGAAATGGTACAGCTATGCGGGAGGCAAGCTGACCAGGGCAAGAACGAGGCTTTTGATGGAGATGGATACCCCCCGGCTTTGGAAACCATGATGGGTAGGAAGTTACTTTTCAAGATTAACGTCTATACTATCATGAAAATATGTGATGATGAGGAGATTATAGAGATGAATCACCCCAAGGAAGTGCATAATCTCCCCTTTGATGCTATAACTGACAATGGGTGCAGTGACTCGATCAACGTGTCGGCAGTTTTGGCCAATATGCAAAATGATACTGATTCTATTTTTTCTATGGATGGTATTGAGGACAGTGTCACCAGCCTCAAAGAGAAAACCCCAGCTAAAAGAGATACCATGGGGATGAAACAGTCTTTGCCTATAAATGTTGACAATGAAGATGAATTGAGATTTTCCACGAACAAGTTCAGTCGCAAGGGTGGAAAGAGGCAGAAGATGCAAATTAGTGGGAGTGATAATTAG 1206 0.4245 KTTILLVPHPSFPLEAFSFKPIVELLRADKIDDSILIDVIGEVVEKEDPRELITSKGRETKHMVDQILPYLEGERVEPLIVIAQCFKPSRWNEKTSVQSHFEYSKLRINPDLEEVRDFHNRRLSEKPANSARISQVSSHGPRSGADELKKGDVAVKTIEEAISSTQEGPIWIAGTIVSINSGKDDWYYKSCRKCLKKVETPIGNRYECGRCGHTHGAASLRFKVEVMACDRTGSITLLMWDREMVQLCGRQADQGKNEAFDGDGYPPALETMMGRKLLFKINVYTIMKICDDEEIIEMNHPKEVHNLPFDAITDNGCSDSINVSAVLANMQNDTDSIFSMDGIEDSVTSLKEKTPAKRDTMGMKQSLPINVDNEDELRFSTNKFSRKGGKRQKMQISGSDN* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4482 401 MobiDBLite consensus disorder prediction 127 141 - -
Amo05g4482 401 Pfam Replication factor-A C terminal domain 173 284 IPR013955 -
Amo05g4482 401 Gene3D - 139 299 IPR012340 -
Amo05g4482 401 PANTHER REPLICATION FACTOR A 1, RFA1 89 320 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo05g4482 401 SUPERFAMILY Nucleic acid-binding proteins 155 293 IPR012340 -
Amo05g4482 401 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A-LIKE 89 320 - -
Amo05g4482 401 CDD RPA1_DBD_C 155 289 IPR013955 -
Amo05g4482 401 MobiDBLite consensus disorder prediction 382 401 - -
Amo05g4482 401 MobiDBLite consensus disorder prediction 124 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4482 Amo-Chr5 116568152 116570612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4482 2 240 Core DNA Replication Machinery Family AT2G06510 26.103 2.68e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4482 - - aip:107630584 529.635