Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4481 ATGTACTACATATTAAATATATCATCATCGATCAAAATTATGGCAGCAAGCACAGCCAGCATCCCATCTCACATAAAAGCTTGGGTCTACAATGAATATGGAAACATTGAAGAGACTCTCAAGCTTGACTCAAACGTAGCTTTACCACAACTCAAGGATGATCAGGTTCTCATCAAGGTTGTGGCTGCAGCCCTTAACCCTGTTGATTATAAGAGGGCCCTTGGATTTTTCAAGGACTCTGACTCTCCATTCCCAACTGCTCCAGGGTATGATGTGGCTGGTGTGGTGGTGAAAGTGGGAAGCGAAGTGAAGAAATTCAAGGTTGGAGATGAAGTTTATGGTGATATAAATGAATATGCTGTGAATAATCCAAAAGCTATTGGGTCAGTGGCAGAGTATACTAGTGCTGAAGAGAACGTGTTGGCTCACAAACCCTCTAATTTGAGCTTTATTGAAGCTGCTAGCCTCCCTGCAGCAATCATCACTGCTTATCAAGGTCTTGAGAGAGTTCAATTTTCTTCTGGAAAATCTATACTTGTTCTTGGAGGTGCTGGTGGAGTTGGAAGTCTTGTTACTCAGCTAGCCAAGCAAGTTTTTGGTGCAGCTAAGGTAGCAGCTACCGCTAGTACCGGAAAACTGGAGCTGTTAAGGAAGTTAGGAGTAGACTTGCCAATTGATTATACAAAGGAGAATTTTGAGGAGCTGCCACAAAAGTTTGATGTTGTGTATGATACAGTAGGACAAACTGACAAGGCATTGAAGGCAATTAAAGAAGGGGGACAAGTAATAACAATAGCAGGACCTGCAAGTCCACCTGCAATATGGTTCTTTCTCCATTCAGATGGTGCTGTTTTGGACAAACTCAAACCTTATTTAGACAGTGGCAAGGTGAAGCCAGTGTTGGATCCAAAGAGCCCTCTTCCATTTTCTAAGGCAATAGAAGCATTTGCCTACCTCAAGACCAATAGAGCCACTGGAAAATTAAGTGAAGTTTCTAAGCCTTTCTGCTCAACCAAGTTCATGGCAGCAAGCACGACTAGCATCCCATCTCACATAAAAGCCTGGGTCTACAATGAATATGGGAACATTGAAGAGACTCTCAAGTTAGACCCAAACATAGCTACACCACAAATCAAGGATGACCAAGTTCTCATCAAGGTTGTGGCTGCAGCCCTTAACCCTGTAGATTATAAGAGGGCCCTTGGACTTTTCAAAGACACTGACTCTCCATTCCCAACAGCTCCAGGGTATGATGTTGCTGGTGTGGTGGTGAAAGTGGGAAGCAAAGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGATATCAATGAGAATGCTGGGAATCCAAAGGCTATTGGGACSTTAGCAGAGTATACTAGTGCCGAAGAGAAGGTGTTGGCACACAAACCCTCTAATTTGAGCTTTATTGAAGCTTCTAGCCTCCCTTTAGCAATCATCACTGCTTATCAAGGTATCGAGAGAGCTCAATTTTCTTCTGGAAAATCTATTCTTGTTCTTGGAGGTGCTGGTGGAGTTGGAAGCCTTGTTATTCAGTTAGCCAAGCAAGTTTTTGGTGCATCTAAGGTAGCAGCTACTGCTAGTACTGGAAAATTGGAGCTGTTAAGGGAGTTAGGAGCAGACTTGCCTATTGATTATACAAAGGAGAATTTTGAAGAACTGCCAGAAAAATTTGATTTTGTGTATGACACAGTAGGCCAAAGTAACAGGGCATTGAAGGCTACCAAAGAAGGAGGACAAGTAATAACAATAGCAGGACCTGCAAGTCCACCTGCAATATGGTTCTTTCTCCATTCAGATGGTGCAGTCTTGGACAAACTCAAACCTTATTTAGACAGTGGCAAGGTGAAGCCAGTGTTGGATCCAAAGAGCCCTCTCCCATTTTCTAAGGCAATAGAAGCATTTTCCTACCTCAAGACCAATAGAGCCACCGGAAAAGTAGTTATACATCCAATCCCATAA 1983 0.4271 MYYILNISSSIKIMAASTASIPSHIKAWVYNEYGNIEETLKLDSNVALPQLKDDQVLIKVVAAALNPVDYKRALGFFKDSDSPFPTAPGYDVAGVVVKVGSEVKKFKVGDEVYGDINEYAVNNPKAIGSVAEYTSAEENVLAHKPSNLSFIEAASLPAAIITAYQGLERVQFSSGKSILVLGGAGGVGSLVTQLAKQVFGAAKVAATASTGKLELLRKLGVDLPIDYTKENFEELPQKFDVVYDTVGQTDKALKAIKEGGQVITIAGPASPPAIWFFLHSDGAVLDKLKPYLDSGKVKPVLDPKSPLPFSKAIEAFAYLKTNRATGKLSEVSKPFCSTKFMAASTTSIPSHIKAWVYNEYGNIEETLKLDPNIATPQIKDDQVLIKVVAAALNPVDYKRALGLFKDTDSPFPTAPGYDVAGVVVKVGSKVKKFKVGDEVYGDINENAGNPKAIGTLAEYTSAEEKVLAHKPSNLSFIEASSLPLAIITAYQGIERAQFSSGKSILVLGGAGGVGSLVIQLAKQVFGASKVAATASTGKLELLRELGADLPIDYTKENFEELPEKFDFVYDTVGQSNRALKATKEGGQVITIAGPASPPAIWFFLHSDGAVLDKLKPYLDSGKVKPVLDPKSPLPFSKAIEAFSYLKTNRATGKVVIHPIP* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4481 660 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 501 522 IPR002364 GO:0008270|GO:0016491
Amo05g4481 660 Gene3D - 359 656 - -
Amo05g4481 660 SUPERFAMILY GroES-like 22 180 IPR011032 -
Amo05g4481 660 CDD MDR_like_2 26 328 - -
Amo05g4481 660 SMART PKS_ER_names_mod 361 656 IPR020843 GO:0016491
Amo05g4481 660 SMART PKS_ER_names_mod 34 328 IPR020843 GO:0016491
Amo05g4481 660 Pfam Alcohol dehydrogenase GroES-like domain 381 449 IPR013154 -
Amo05g4481 660 Pfam Alcohol dehydrogenase GroES-like domain 54 115 IPR013154 -
Amo05g4481 660 CDD MDR_like_2 353 656 - -
Amo05g4481 660 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 16 328 IPR044626 GO:0016628
Amo05g4481 660 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 343 660 IPR044626 GO:0016628
Amo05g4481 660 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 175 196 IPR002364 GO:0008270|GO:0016491
Amo05g4481 660 Pfam Zinc-binding dehydrogenase 545 656 - -
Amo05g4481 660 Pfam Zinc-binding dehydrogenase 219 328 - -
Amo05g4481 660 SUPERFAMILY GroES-like 349 508 IPR011032 -
Amo05g4481 660 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 343 660 - -
Amo05g4481 660 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 16 328 - -
Amo05g4481 660 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 148 274 IPR036291 -
Amo05g4481 660 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 474 600 IPR036291 -
Amo05g4481 660 Gene3D - 32 328 - -
Amo05g4481 660 Gene3D - 493 607 - -
Amo05g4481 660 Gene3D - 167 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4481 Amo-Chr5 116504963 116523508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4481 408 571 Monolignol Biosynthesis Gene Families AT1G72680 27.461 5.99e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4481 K18980 - gmx:100791274 495.738