Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4475 ATGATCTTTACTATCATTCTTCTTTTGTTACTCTTCCTTCACTGTGTGAGTGATTTATTTCCATGCATTCAAATCCAAATCATCAAGATGATGAATGGAAAAGCCTCCGTCTCTAAGGAACTTAATGCCAAACACATCAAGGTTTTAGAGGGACTTGTTAGGCTACCTGACAATAGGGAATGTGCAGATTGCCGGAATAAGGCACCACGATGGGCAAGTGTGAACCTAGGAATTTTCATTTGCATGCAGTGTTCAGGAATTCACCGAAGTCTTGGAGTACACATATCACAGGTGCGGTCTACAACTTTGGATACATGGTTGCCAGAACAAGTGTCTTTCATGCAACTTATGGGTAATGTGAATGCCAATAAGCACTGGGAGGCTGAGCTGCCGACGAATTTTGACAGAAATCGATATGGAATCGACAAATTTATTCGCGCCAAGTATGTGGATAAAAAATGGGCTTCAAAACATGGTCTACAAGCAGCATCTGCAAAGTCATCTGAAACATTGAGGAATCATCAAAGGAATAGAAGATTGTCTCTTGAGGAAAGCATTCTTGTGGGCCACATGGCGCAAATTCAGCCGCCACAGCCGCAAGTAGCAAAATCTCATGAGATCCCCTCAGGTTTGGAAAGAAAGAAAAGTGCACCACAAGTAAAGATCAGGGGGCCATCGGCATCACTTGATTTTGATAATCTCACAAGAAATGGAAACAGTACTACCGTTGATCTTTTTGCCTTTCTTAATTTC 753 0.4183 MIFTIILLLLLFLHCVSDLFPCIQIQIIKMMNGKASVSKELNAKHIKVLEGLVRLPDNRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSTTLDTWLPEQVSFMQLMGNVNANKHWEAELPTNFDRNRYGIDKFIRAKYVDKKWASKHGLQAASAKSSETLRNHQRNRRLSLEESILVGHMAQIQPPQPQVAKSHEIPSGLERKKSAPQVKIRGPSASLDFDNLTRNGNSTTVDLFAFLNF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4475 251 Gene3D Arf GTPase activating protein 28 162 IPR038508 -
Amo05g4475 251 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 31 248 - -
Amo05g4475 251 SUPERFAMILY ArfGap/RecO-like zinc finger 47 156 IPR037278 -
Amo05g4475 251 SMART arf_gap_3 46 162 IPR001164 GO:0005096
Amo05g4475 251 PRINTS HIV Rev interacting protein signature 98 119 IPR001164 GO:0005096
Amo05g4475 251 PRINTS HIV Rev interacting protein signature 77 94 IPR001164 GO:0005096
Amo05g4475 251 PRINTS HIV Rev interacting protein signature 58 77 IPR001164 GO:0005096
Amo05g4475 251 MobiDBLite consensus disorder prediction 197 220 - -
Amo05g4475 251 CDD ArfGap 49 149 - -
Amo05g4475 251 ProSiteProfiles ARF GTPase-activating proteins domain profile. 46 162 IPR001164 GO:0005096
Amo05g4475 251 Pfam Putative GTPase activating protein for Arf 48 157 IPR001164 GO:0005096
Amo05g4475 251 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 31 248 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4475 Amo-Chr5 116172748 116176396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4475 30 168 C2H2 Transcription Factor Family AT4G05330 42.069 9.84e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4475 K12486 - gmx:100802691 303.908