Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4471 ACCGAATGCGAAAAGATCTCATTTAAAATTACATATTTGGATGCCACGTTAATCACCTCACAGCTAGAAATTTCCAGAAAGAGGGGGGACAAAACACTAGGGCACAAAAGAATCTCTCGTTTTCTCTTTTCCCTTCTTTCTCATTCTCTCGGCCTCCGTTCCGTTTCGTCGCTAAAACGGTTATTGGCCAACAATTGTTCTGAGATGGCTGATGCACACGAGACTGACAAGAACATTGAGATTTGGAAGATCAAGAAATTGATCAAAGCTCTCGAGGCTGCTAGAGGAAATGGGACAAGTATGATTTCCCTTATCATGCCCCCACGTGATCAAATATCTCGAGTTACCAAGATGCTTGGTGATGAGTTTGGTACTGCTTCCAACATCAAGAGCAGGGTGAACCGGCAGTCTGTGCTTGGGGCCATCACCTCTGCCCAGCAGAGGCTCAAGCTCTATAACAAGGTTCCTCCAAACGGGCTTGTGCTGTATACTGGCACAATTGTTACTGAAGATGGGAAGGAAAAGAAGGTTACTATTGACTTTGAGCCTTTCAGACCTATCAATGCTTCCCTCTATCTGTGTGACAACAAGTTTCATACTGAGGCTCTAAATGAGCTTTTGGAGTCAGATGACAAGTTTGGGTTCATTGTCATGGATGGCAATGGTACCCTGTTTGGCACCTTGAGCGGTAACACAAGGGAAGTGCTTCATAAATTCAGTGTCGATCTCCCAAAGAAGCATGGAAGAGGAGGGCAATCAGCTCTTCGATTTGCCCGTCTTCGCATGGAGAAACGTCATAACTATGTCAGGAAGACTGCAGAGCTTGCAACTCAGTTTTATATCAATCCAGCTACCAGCCAGCCAAATGTTTCTGGATTAATACTTGCTGGTTCAGCTGATTTCAAAACTGAGCTTAGTCAGTCTGATATGTTTGATCCTCGACTCCAAGCAAAAATTCTCAATGTTGTAGATGTTTCCTATGGTGGTGAAAATGGGTTTAATCAGGCTATTGAACTTTCATCTGAGATTCTGTCCAATGTGAAATTTATCCAGGAGAAACGCTTGATTGGAAAATATTTTGAGGAAATTAGCCAGGATACTGGGAAATATGTTTTTGGGGTTGAGGATACTTTGAAAGCTTTGGAGATGGGAGCTGTTGAGACACTCATTGTGTGGGAAAATTTGGATATGAGTAGGTTTGTCTTGAAAAACAGTGCTACTGGTGAGGTTGTCATTCAACACTTCAACAAGGAACAAGAGGCCAATCAGAGCAACTTCCGGGATCCTGTATCCAATGCTGATTATGAGGTGCAGGAAAAAATCTCTCTTTTGGAGTGGTTTGCAAATGAATACAGGCGGTTTGGTTGCACTCTTGAGTTTGTCACAAATAAGTCGCAAGAAGGTTCACAGTTTTGTAGAGGTTTTGGTGGGATTGGTGGTATCTTGCGCTACCAGCTGGACATGAGGACATTTGATGATTTCTCTGATGATGATGCTGTCTATGAATCTGAATAG 1515 0.4304 TECEKISFKITYLDATLITSQLEISRKRGDKTLGHKRISRFLFSLLSHSLGLRSVSSLKRLLANNCSEMADAHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDMSRFVLKNSATGEVVIQHFNKEQEANQSNFRDPVSNADYEVQEKISLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRTFDDFSDDDAVYESE* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4471 504 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 69 502 IPR004403 GO:0003747|GO:0006415
Amo05g4471 504 SUPERFAMILY L30e-like 346 488 IPR029064 -
Amo05g4471 504 Gene3D eRF1 domain 2 204 345 IPR042226 -
Amo05g4471 504 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 80 485 IPR004403 GO:0003747|GO:0006415
Amo05g4471 504 Pfam eRF1 domain 1 86 206 IPR005140 -
Amo05g4471 504 SMART eRF1_1_2 72 208 IPR005140 -
Amo05g4471 504 SUPERFAMILY Translational machinery components 210 344 - -
Amo05g4471 504 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 69 502 - -
Amo05g4471 504 Pfam eRF1 domain 3 349 486 IPR005142 -
Amo05g4471 504 Gene3D eRF1 domain 1 65 203 IPR024049 -
Amo05g4471 504 Pfam eRF1 domain 2 212 345 IPR005141 -
Amo05g4471 504 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 74 208 IPR024049 -
Amo05g4471 504 Gene3D - 347 504 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4471 Amo-Chr5 116104598 116107140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4471 69 502 Eukaryotic Initiation Factors Gene Family AT3G26618 89.631 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4471 K03265 - gmx:100785916 805.438