Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4440 ATGAATACACTTTTGCAGAAYACTAAGMTCTCTAACAATCAAATCAATACAAGAGAGAAAAATAATATAATGTCACCAGTTGGATTACCACCTGGGTTTAGGTTTCATCCAACAGATGAAGAGCTTGTTAACTATTATCTAAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGATATCATTCCTGAGGTTGATCTCTACAAATGTGAACCATGGGAATTAGCAGAAAAATCATTTTTGCCGAGTAGAGATCCAGAGTGGTATTTCTTTGGACCAAGGGACAGAAAATACCCTAACGGATTCAGAACAAATAGAGCAACACGAGCAGGGTACTGGAAATCAACAGGTAAAGACAGGAGAGTTTCAAGCCAAAGCAGACCAATTGGTATGAAGAAGACTTTGGTTTATTATAGAGGAAGGGCTCCTCAGGGAATCAGAACTGATTGGGTTATGCACGAATATCGTCTCGATGACAAGGACTCTGAAGACACCACCGGTTTACAGGATACTTATGCTTTGTGCCGTGTGTTCAAGAAAAATGGAATATGTACGGATGTTGAAGAGCAAGTAGGGCATTGTAGTAACATGTCTTCACTAATTGAGAGCTCACAAACCATAATCAATAATAATAACAATAATAGTAATAATAATAATGAGTATTGTGAAACCATGTCACCAGACATAGCAGGGGTTTCATCTTCATGTTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATCACRGAAGATGCATGGTACTCTTCTAATGCACCAAATATGGTTGGTGGTGAAGAAGTTTCACATGTTACATTTACAAGCTAA 828 0.3792 MNTLLQNTKXSNNQINTREKNNIMSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSSQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKDSEDTTGLQDTYALCRVFKKNGICTDVEEQVGHCSNMSSLIESSQTIINNNNNNSNNNNEYCETMSPDIAGVSSSCLEEEDKDDSWMQFITEDAWYSSNAPNMVGGEEVSHVTFTS* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4440 275 SUPERFAMILY NAC domain 22 179 IPR036093 GO:0003677|GO:0006355
Amo05g4440 275 Pfam No apical meristem (NAM) protein 30 156 IPR003441 GO:0003677|GO:0006355
Amo05g4440 275 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 15 274 - -
Amo05g4440 275 ProSiteProfiles NAC domain profile. 29 179 IPR003441 GO:0003677|GO:0006355
Amo05g4440 275 Gene3D NAC domain 38 182 IPR036093 GO:0003677|GO:0006355
Amo05g4440 275 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 15 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4440 Amo-Chr5 115529876 115534508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4440 24 268 NAC Transcription Factor Family AT3G17730 76.984 4.04e-134 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g4440 NAM 8.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4440 - - adu:107490712 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4440 05 115529876 115534508 Amo15g1680 15 115901747 115906687 hybridization