Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4437 ATGGAGTATGGTAGCGGAGGGAGTGGTGGGTCCCCAGGGGAGCACCACCATCACCACCACAATCACAACGACGCTTCTTCTTCCGAGCGGAGGAAAAAGCGCTACCACCGTCACAGTGCCAATCAGATTGAAAGGCTTGAAAGGGTGTTCAAGGAGTGTAATCACCCAGACGAGAAGCAGAGATTGCAGTTAAGCAGAGAATTAGGCTTGGCTCCAAGGCAGATCAAATTTTGGTTCCAGAACAGAAGGACCCAGATGAAGGCGCATGGAGAGAGAGCAGATAACTGTGCACTGAGGGCAGAGAATGATAAGATACGTTGCGAGAACATAGTCATAAGGGAGGCCCTCAAGAACCTTGATAGAGTGTCTAGCATTGCGGCTAAGTACATTGGAAGGCCAATTTCACAGCTCCCACCGGTTCAGCCAATTCATATATCCTCCCTTGATTTGACCATGTCGAGTTTCGGGGGCCACGCCGGGTTCGGTGGCGGCCCCTCCCTCGACCTTGACCTCCTTCCGGGGAGTTCCTCGGCTGTGCCGCCGCATGTGCCTTACCAGCCGGCTTGTCTCTCGGACATGGACAAGTCTCTAATGTCAGGCATTGCCTCTAACGCCATGGAGGAATTGCTGAGCCTCTTGCAGACCAATGAGCCGTTGTGGATGAAATCAAGTGATGGGAGAGATGTTCTTAATTTTGATGCATATGATAGGATGTTTCCAAAGGCTAATAGTCACTTGAAGAACCCCAATGTTAGGATAGAAGCTTCTAGAGACTCTGGTGTTGTTATCATGAATGGCCTAACCTTGGTTGACATGTTCATGGACCCAAGCAAGTGGATGGAGCTGTTTCCCACAATTGTAACGGCTGCAAGAACAATTGAAGTTATATCTTCTGGGATGATGGGTGGTCATAGTGGTTCTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTGTCTCCACTTGTTTCAACAAGAGAATTCTACTTCCTCCGTTATTGTCAGCAAATTGAGCAAGGTCTATGGGCAATAGTAGATGTTTCCTATGATTTTCCACAGGACAATCACTTTGCTCCGCCGTTCCGATCTCATCGCCTTCCTTCCGGTTGCTTCATTCAGGACATGCCTAATGGATACTCCAAGGTTACATGGGTTGAACATGTAGAGATCGAAGACAAAACTCCGGTTCATCGTCTTTTCCGGAATCTTGTTTATAATGGAATGGCATTTGGAGCTCAGAGATGGCTTGCTGTGCTGCAGAGGATGTGTGAAAGATTGGCTTGTTTAATGGTAACAGGAAATTCCACCAGGGACCTTGGAGGAGCACAAAGAATGGTAACCAATTTTTGCGCGAGCATTGGCACGTCGGCCGGCCATAGGTGGACCACACTGTCCGGGATGAATGAGATTGGTGTCAAGGTCACTGTCCACAAGAGCACAGACCCCGGTCAACCTAGCGGCGTGGTGCTGAGCGCCGCCACCACCATTTGGCTCCCTCTCCCTCCACAAACCGTCTTCAATTTCTTCAAGGATGAAAGAAAAAGACCACAGTGGGATGTTCTTTCTAATGGCAATGTACAAGAAGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGTATATCTGTGCTTCGGGCATACAACACAAGCCAGAATAACACACTGATACTACAAGAGAGTTGCATAGATCCATCAGGCTCCATAGTAGTATACTGTCCGGTTGAGCTTCCATCGATCAACATAGCAATGAGCGGCGAGGACCCGTCGTATATCCCCCTGGTACCGTCAGGTTTCACGATCACCCCGGACGGAAACCACCACGACCATCAAGCAGGCGGTGACGGGGCATCCACAAGCTCAACCCCAAGCAGAAGCAGCAGCACCATGGTGGGAATGAGATCCGGCGGGTCACTGGTGACGGTTGCATTCCAAATACTAGTGAGTAGCTTGCCATCTGCAAAGCTCAACATGGAGTCTGTAGCAACTGTTAATAACCTCATCAGCACCACTGTTCAGCAAATTAAAGCTGCTTTGAATTGTCCTACTTCCTGA 2052 0.4903 MEYGSGGSGGSPGEHHHHHHNHNDASSSERRKKRYHRHSANQIERLERVFKECNHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAHGERADNCALRAENDKIRCENIVIREALKNLDRVSSIAAKYIGRPISQLPPVQPIHISSLDLTMSSFGGHAGFGGGPSLDLDLLPGSSSAVPPHVPYQPACLSDMDKSLMSGIASNAMEELLSLLQTNEPLWMKSSDGRDVLNFDAYDRMFPKANSHLKNPNVRIEASRDSGVVIMNGLTLVDMFMDPSKWMELFPTIVTAARTIEVISSGMMGGHSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNHFAPPFRSHRLPSGCFIQDMPNGYSKVTWVEHVEIEDKTPVHRLFRNLVYNGMAFGAQRWLAVLQRMCERLACLMVTGNSTRDLGGAQRMVTNFCASIGTSAGHRWTTLSGMNEIGVKVTVHKSTDPGQPSGVVLSAATTIWLPLPPQTVFNFFKDERKRPQWDVLSNGNVQEVAHIANGSHPGNCISVLRAYNTSQNNTLILQESCIDPSGSIVVYCPVELPSINIAMSGEDPSYIPLVPSGFTITPDGNHHDHQAGGDGASTSSTPSRSSSTMVGMRSGGSLVTVAFQILVSSLPSAKLNMESVATVNNLISTTVQQIKAALNCPTS* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4437 683 Gene3D - 199 424 IPR023393 -
Amo05g4437 683 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 118 IPR042160 -
Amo05g4437 683 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 119 681 IPR042160 -
Amo05g4437 683 CDD homeodomain 31 87 IPR001356 GO:0003677
Amo05g4437 683 Pfam START domain 202 424 IPR002913 GO:0008289
Amo05g4437 683 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Amo05g4437 683 SUPERFAMILY Homeodomain-like 12 88 IPR009057 -
Amo05g4437 683 SUPERFAMILY Bet v1-like 192 425 - -
Amo05g4437 683 MobiDBLite consensus disorder prediction 1 38 - -
Amo05g4437 683 SMART HOX_1 30 93 IPR001356 GO:0003677
Amo05g4437 683 ProSiteProfiles START domain profile. 191 427 IPR002913 GO:0008289
Amo05g4437 683 Gene3D - 15 102 - -
Amo05g4437 683 MobiDBLite consensus disorder prediction 601 632 - -
Amo05g4437 683 MobiDBLite consensus disorder prediction 612 632 - -
Amo05g4437 683 CDD START_ArGLABRA2_like 195 423 - -
Amo05g4437 683 Pfam Homeodomain 32 87 IPR001356 GO:0003677
Amo05g4437 683 MobiDBLite consensus disorder prediction 12 30 - -
Amo05g4437 683 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 13 118 - -
Amo05g4437 683 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 119 681 - -
Amo05g4437 683 SMART START_1 200 424 IPR002913 GO:0008289
Amo05g4437 683 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Amo05g4437 683 SUPERFAMILY Bet v1-like 441 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4437 Amo-Chr5 115487634 115491265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4437 28 683 Homeobox Transcription Factor Family AT1G73360 59.830 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo05g4437 START 1.5e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4437 K09338 - gmx:100809075 1083.94