Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4426 ATGGAGTATGGTAGCGGAGGGAGTGGTGGGTCCCCAGGGGAGCACCACCATCACCACCACAATCACAACGACGCTTCTTCTTCCGAGCGGAGGAAAAAGCGCTACCACCGTCACAGTGCCAATCAGATTGAAAGGCTTGAAAGGGTGTTCAAGGAGTGTAATCACCCAGACGAGAAGCAGAGATTGCAGTTAAGCAGAGAATTAGGCTTGGCTCCAAGGCAGATCAAATTTTGGTTCCAGAACAGAAGGACCCAGATGAAGGCGCATGGAGAGAGAGCAGATAACTGTGCACTGAGGGCAGAGAATGATAAGATACGTTGCGAGAACATAGTCATAAGGGAGGCCCTCAAGAACGTTATCTGCCCCTCTTGTGGTGGTGGCCCCTCCCTCAACGACGATTCCTATTTCGATGAACAAAAATTGAGACTTGAGAATGCCCAACTAAAAGAAGAGCTTGATAGAGTGTCTAGCATTGCGGCTAAGTACATTGGAAGGCCAATTTCACAGCTCCCACCGGTTCAGCCAATTCATATATCCTCCCTTGATTTGACCATGTCGAGTTTCGGGGGCCACGCCGGGTTCGGTGGCGGCCCCTCCCTCGACCTTGACCTCCTTCCGGGGAGTTCCTCGGCTGTGCCGCCGCATGTGCCTTACCAGCCGGCTTGTCTCTCGGACATGGACAAGTCTCTAATGTCAGGCATTGCCTCTAACGCCATGGAGGAATTGCTGAGCCTCTTGCAGACCAATGAGCCGTTGTGGATGAAATCAAGTGATGGGAGAGATGTTCTTAATTTTGATGCATATGATAGGATGTTTCCAAAGGCTAATAGTCACTTGAAGAACCCCAATGTTAGGATAGAAGCTTCTAGAGACTCTGGTGTTGTTATCATGAATGGCCTAACCTTGGTTGACATGTTCATGGACCCAAGCAAGTGGATGGAGCTGTTTCCCACAATTGTAACGGCTGCAAGAACAATTGAAGTTATATCTTCTGGGATGATGGGTGGTCATAGTGGTTCTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTGTCTCCACTTGTTTCAACAAGAGAATTCTACTTCCTCCGTTATTGTCAGCAAATTGAGCAAGGTCTATGGGCAATAGTAGATGTTTCCTATGATTTTCCACAGGACAATCACTTTGCTCCGCCGTTCCGATCTCATCGCCTTCCTTCCGGTTGCTTCATTCAGGACATGCCTAATGGATACTCCAAGGTTACATGGGTTGAACATGTAGAGATCGAAGACAAAACTCCGGTTCATCGTCTTTTCCGGAATCTTGTTTATAATGGAATGGCATTTGGAGCTCAGAGATGGCTTGCGGTGCTGCAGAGGATGTGTGAAAGATTGGCTTGTTTAATGGTAACAGGAAATTCCACCAGGGACCTTGGAGGAGTGATTCCTTCTCCAGAGGGAAAGAGGAGCATGATGAGGCTAGCACAAAGAATGGTAACCAATTTTTGCGCGAGCATTGGCACGTCGGCCGGCCATAGGTGGACCACACTGTCCGGGATGAATGAGATTGGTGTCAAGGTCACTGTCCACAAGAGCACAGACCCCGGTCAACCTAGCGGCGTGGTGCTGAGCGCCGCCACCACCATTTGGCTCCCTCTCCCTCCACAAACCGTCTTCAATTTCTTCAAGGATGAAAGAAAAAGACCACAGTGGGATGTTCTTTCTAATGGCAATGTACAAGAAGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGTATATCTGTGCTTCGGGCATACAACACAAGCCAGAATAACACACTGATACTACAAGAGAGTTGCATAGATCCATCAGGCTCCATAGTAGTATACTGTCCGGTTGAGCTTCCATCGATCAACATAGCAATGAGCGGCGAGGACCCGTCGTATATCCCCCTGGTACCGTCAGGTTTCACGATCACCCCTGACGGAAACCACCACGATCATCAAGCAGGCGGTGACGGGGCATCCACAAGCTCAACCCCGAGCAGAAGCAGCAGCACCATGGTGGGAATGAGATCCGGCGGGTCACTGGTGACGGTTGCATTCCAAATACTAGTGAGTAGCTTGCCATCTGCAAAGCTCAACATGGAGTCTGTAGCAACTGTTAATAACCTCATCAGCACCACTGTTCAGCAAATTAAAGCTGCTTTGAATTGTCCTACTTCCTGA 2193 0.4893 MEYGSGGSGGSPGEHHHHHHNHNDASSSERRKKRYHRHSANQIERLERVFKECNHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAHGERADNCALRAENDKIRCENIVIREALKNVICPSCGGGPSLNDDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLTMSSFGGHAGFGGGPSLDLDLLPGSSSAVPPHVPYQPACLSDMDKSLMSGIASNAMEELLSLLQTNEPLWMKSSDGRDVLNFDAYDRMFPKANSHLKNPNVRIEASRDSGVVIMNGLTLVDMFMDPSKWMELFPTIVTAARTIEVISSGMMGGHSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNHFAPPFRSHRLPSGCFIQDMPNGYSKVTWVEHVEIEDKTPVHRLFRNLVYNGMAFGAQRWLAVLQRMCERLACLMVTGNSTRDLGGVIPSPEGKRSMMRLAQRMVTNFCASIGTSAGHRWTTLSGMNEIGVKVTVHKSTDPGQPSGVVLSAATTIWLPLPPQTVFNFFKDERKRPQWDVLSNGNVQEVAHIANGSHPGNCISVLRAYNTSQNNTLILQESCIDPSGSIVVYCPVELPSINIAMSGEDPSYIPLVPSGFTITPDGNHHDHQAGGDGASTSSTPSRSSSTMVGMRSGGSLVTVAFQILVSSLPSAKLNMESVATVNNLISTTVQQIKAALNCPTS* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4426 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 13 728 - -
Amo05g4426 730 CDD homeodomain 31 87 IPR001356 GO:0003677
Amo05g4426 730 Coils Coil 138 158 - -
Amo05g4426 730 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Amo05g4426 730 SMART START_1 233 457 IPR002913 GO:0008289
Amo05g4426 730 MobiDBLite consensus disorder prediction 1 38 - -
Amo05g4426 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 728 IPR042160 -
Amo05g4426 730 SUPERFAMILY Homeodomain-like 12 88 IPR009057 -
Amo05g4426 730 MobiDBLite consensus disorder prediction 659 679 - -
Amo05g4426 730 MobiDBLite consensus disorder prediction 648 679 - -
Amo05g4426 730 SMART HOX_1 30 93 IPR001356 GO:0003677
Amo05g4426 730 SUPERFAMILY Bet v1-like 225 458 - -
Amo05g4426 730 SUPERFAMILY Bet v1-like 478 722 - -
Amo05g4426 730 ProSiteProfiles START domain profile. 224 460 IPR002913 GO:0008289
Amo05g4426 730 Gene3D - 15 102 - -
Amo05g4426 730 MobiDBLite consensus disorder prediction 12 30 - -
Amo05g4426 730 Pfam START domain 235 457 IPR002913 GO:0008289
Amo05g4426 730 CDD START_ArGLABRA2_like 228 456 - -
Amo05g4426 730 Gene3D - 232 457 IPR023393 -
Amo05g4426 730 Pfam Homeodomain 32 87 IPR001356 GO:0003677
Amo05g4426 730 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4426 Amo-Chr5 115293533 115297499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4426 28 730 Homeobox Transcription Factor Family AT1G73360 64.689 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo05g4426 START 1.7e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4426 K09338 - gmx:100809075 1192.95