Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4419 ATGACTAATTTTGAGAAAGAAGAGGCACCAGCACTTTCAGAAACACAAGCACAAGTATCTCATAAGAGACATGCTAGTTTTGAGGGACATGGTTGGCCAGTTACTAGTAAGAGAACAAGTCCCCTTATGAACATGAGTGGTCCAATATATGCTACCAATGGAACTGGAAACTTTTTGCACCAGGGTCTAGTTGTGACAGTAAACAAAGTTTGGAGTAACACAGAAAAATCTTCCAGTTCATCTGGCTTGGGCGAAAATCATTGGAACAACAACTATGCTAGAAAGAATGAACACTTGCTTAACTCCGGAGAACTTGGAATGTGTGATGATCCTTATTGTACTACTTGTCCTGCTAACTTCAAGGATTCTCATAGGAGAAATTCAAAAGCTTCAACAGCTTTTGATGCTAAGTTACAAGGTGCTCTCTATGGGGATGCCAAGTGTTACGCAAGAAGACTCTTCTCCTTTTGCTCTTCATTCTCTCCTGGAATTATTAACCCTCACACTAAACTTGTACAACAATGGAACAAGTTCCTGGCTATTTCTTGTTTATTTGCAATCTTTTTGGATCCGTTATTTTTCTTCCTAATCTATGTGCAGAAGGATTGCAAATGTATTGCTATAGATGGGAAAATGGCATCAACACTAGTTATATTTAGAAGTGTGAATGATTTTGTATATTTCTTAAACATCCTTCTCCAGTTTAGGTTGGCTTATGTTTCTCCAGAGTCTAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTACATTACTTGCGGACCTATTTTCTCATTGACTTATTTGTTGCACTTCCTCTTCCTCAGATAATGATAGTGTTTGTGCTTCCAAGGAATTTGGGGATGTCATCAGGAGCGAATTATGCTAAGAATATTCTTCGCGCGGCCGTTCTTGTGCAGTATATTCCCAGGTTATTCAGGTTTCTTCCATTGCTAATCGGCCAATCTCCATCAGGATTCATATTTGAGTCAGCATGGACAAATTTCATCATAAATCTTCTTATTTTTATGCTGTCTAGCCATGTTGTTGGCTCTTGCTGGTACCTCTTTGGTGTGCAGAGGGTTAATCAATGTTTGCGAGATGCATGTCATAATTCTGATATTGATGAATGCATGAAAGTCATTGATTGTGGGCATGGTCGTACTTTAGACGATCAATCTGGCAAAACATCTGCTGGTTGGATCAACAATGTTGAGGCCATTGCTTGTTTAAATCCCTCTTCTAAGGCTTCTAATGGCTTTAGTTATGGGATCTATGCCAATGCTGTACCACTTACAACAGAAACTGACCTTGTCAACAAATATTTGTATGCTTTGTTTTGGGGTTTCCAGCAAATAAGTTCTCTCGGCAGTAGTCTAATCCCAAGTTATTTTGTGTGGGAAGTGCTTTACACAATGGCAATCATAGGATTGGGACTCTTGCTTTTCGCGCTTCTCATTGGAAATATACAGAACTTTCTTCAGTCTCTTGGTCGGAGAAAGCTTGAAATGCAACTTAGAGGCCGTGATGTCGAGCGATGGATGAGCCATCGTCACTTGCCAGAAGATCTAAAAAAGAGAGTGCGCCAGGCCGAACGGTATAATTGGGCTGCAACAAGGGGAGTGAATGAAGAAATACTTATGGAAAATTTGCCAGAAGATCTTCAGAGAGACATAAGGCGTCATCTCTTCAAATTTATCAAGAAAGTCCGAATTTTCGCCTTGATGGATGAGCCAATCTTAGATGCTATTTGTGAGAGAATAAGACATAAGACATACATCAAAGGAAGTAGAATTTTGAATCATGGTGGCATTATAGAGAAAATGGTCTTTGTTGTTCGCGGGAAATTGGAGAGCGTTGGAGTTGATGGAATCGTAGTTCCTTTAGCTGAAGGGGATGCTTGTGGTGAAGAACTTTTGACATGGTATCTTGAACATTCTTTGGTGAGAACAGATGGTAAGAAAGTAAGACTTCCAGGACAGAGGTTGCTTAGCAACAGGACGGTGAAGTGCTTAACAAATGTGGAGGTATTTTCACTCCGAGCAGCAGATCTTGAAGAAGTCACGATCTATTTCACAAGATTCTTGAGGAGTCCACATGTTCAAGGAGCTCTAAGGTATGAATCACCTTATTGGAGATCACTTGCAGCAACACGAATTCAGGTTGCCTGGAGATACAGGAAGAAACGTCTGAGTCGTTCTGATAGCCAAACAATCTAA 2232 0.4037 MTNFEKEEAPALSETQAQVSHKRHASFEGHGWPVTSKRTSPLMNMSGPIYATNGTGNFLHQGLVVTVNKVWSNTEKSSSSSGLGENHWNNNYARKNEHLLNSGELGMCDDPYCTTCPANFKDSHRRNSKASTAFDAKLQGALYGDAKCYARRLFSFCSSFSPGIINPHTKLVQQWNKFLAISCLFAIFLDPLFFFLIYVQKDCKCIAIDGKMASTLVIFRSVNDFVYFLNILLQFRLAYVSPESRVVGAGDLVDHPKKIALHYLRTYFLIDLFVALPLPQIMIVFVLPRNLGMSSGANYAKNILRAAVLVQYIPRLFRFLPLLIGQSPSGFIFESAWTNFIINLLIFMLSSHVVGSCWYLFGVQRVNQCLRDACHNSDIDECMKVIDCGHGRTLDDQSGKTSAGWINNVEAIACLNPSSKASNGFSYGIYANAVPLTTETDLVNKYLYALFWGFQQISSLGSSLIPSYFVWEVLYTMAIIGLGLLLFALLIGNIQNFLQSLGRRKLEMQLRGRDVERWMSHRHLPEDLKKRVRQAERYNWAATRGVNEEILMENLPEDLQRDIRRHLFKFIKKVRIFALMDEPILDAICERIRHKTYIKGSRILNHGGIIEKMVFVVRGKLESVGVDGIVVPLAEGDACGEELLTWYLEHSLVRTDGKKVRLPGQRLLSNRTVKCLTNVEVFSLRAADLEEVTIYFTRFLRSPHVQGALRYESPYWRSLAATRIQVAWRYRKKRLSRSDSQTI* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4419 743 ProSiteProfiles cAMP/cGMP binding motif profile. 576 644 IPR000595 -
Amo05g4419 743 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 739 - -
Amo05g4419 743 Gene3D - 176 501 - -
Amo05g4419 743 SUPERFAMILY Voltage-gated potassium channels 167 504 - -
Amo05g4419 743 PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL PROTEIN 37 739 - -
Amo05g4419 743 Gene3D Jelly Rolls 574 698 IPR014710 -
Amo05g4419 743 SUPERFAMILY cAMP-binding domain-like 504 695 IPR018490 -
Amo05g4419 743 Gene3D Helix hairpin bin 503 568 - -
Amo05g4419 743 MobiDBLite consensus disorder prediction 1 39 - -
Amo05g4419 743 CDD CAP_ED 576 692 IPR000595 -
Amo05g4419 743 Pfam Ion transport protein 178 504 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4419 Amo-Chr5 115094694 115100773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4419 29 653 Ion Channels AT3G17700 59.076 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4419 K05391 - gmx:100781973 1087.4