Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4418 ATGGGAAGAGGCAGAGGAGTTGCGACTCTGAAACCCACGGCGGCGGTTGCGGCAGCGGAGATAAATGGATCAGGGCCAATGCCAAGACCGTGGGGAAGATTCGCCGCCGAAATCAAAGACCTGTTGAAGAAAGCAAGGATTTGGCTCGGAACCTTCGATTCCGCCGAGGACGCCGCATGCGCTTACGACGCCGCCGCAAGAACACTCCGGGGACCAAAAGCCAAGACCAATTTTCCTCACCGCTCAGGATCCAGCTCTCAATGTAGAACTGCAGCTTCGCCAGCACCACTTGCTGCGATGGGAGATTCAACCCTTCCGCTGCTGCTCCGCCGCCCTGGATGGCAACTTCCTTCTCGGCCAGAGCCGTTTCCTCCATATTTCCTTTTCTTTTTTTACATTTTCGTTTTTTTTTCCAATTAA 420 0.5405 MGRGRGVATLKPTAAVAAAEINGSGPMPRPWGRFAAEIKDLLKKARIWLGTFDSAEDAACAYDAAARTLRGPKAKTNFPHRSGSSSQCRTAASPAPLAAMGDSTLPLLLRRPGWQLPSRPEPFPPYFLFFFYIFVFFSN* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4418 139 Pfam AP2 domain 29 71 IPR001471 GO:0003700|GO:0006355
Amo05g4418 139 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 29 85 - -
Amo05g4418 139 MobiDBLite consensus disorder prediction 73 93 - -
Amo05g4418 139 SUPERFAMILY DNA-binding domain 25 80 IPR016177 GO:0003677
Amo05g4418 139 Gene3D AP2/ERF domain 25 81 IPR036955 GO:0003700|GO:0006355
Amo05g4418 139 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Amo05g4418 139 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Amo05g4418 139 ProSiteProfiles AP2/ERF domain profile. 20 79 IPR001471 GO:0003700|GO:0006355
Amo05g4418 139 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 29 85 - -
Amo05g4418 139 MobiDBLite consensus disorder prediction 78 92 - -
Amo05g4418 139 SMART rav1_2 28 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4418 Amo-Chr5 115079112 115080298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4418 1 79 AP2-EREBP Transcription Factor Family AT1G50640 65.116 6.26e-27 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo05g4418 AP2 5.6e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4418 K09286 - ming:122069650 95.9005