Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4413 ATGGCTAGCTTTGAGAAAGATGAGGAGCCAATGCTGTTAGAAACACGTGGGCTGCGATCTGATGAACATGTGGATTCTAATTTCCGGAGGCTTGTGACAAGGACACGAAGTGCATCAATGTCAATTCCCATGGTCTCCATGGAATCGTCTGACAGAGAAGCTACTTTTGTGGGGCATACTGGTCCACTACGTACTGTGAGAAAAATCCCTTTTCCACAAATGAGTGGTCCACTCTATCCCACCCAAGGAACCGGAAATTCTTTGCAGCGTAGTAGAGTTGTGGCAGGAAACAATGTAGGGGAGAGCAGGATAGAAAGGTTCCGCAACACAGGTGAAAGTCATTGGAATAACAACAATGATAGGAAGAATGAACACTTACTGAGGTCTGGGCAATTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCTGCTAACTTTAAGGCTGCCCAACAAGGGAATTCAAGAACTTCGTATAGACGTGATCCCGTGTTCCATAATGTTCTCTATGGAGATGCCAAGGGTTTCGCTAGAAAAGTTTACTCATTTTTCTCTTCTCATGTTCCTGGAGTTATGAATCCTCACAATAAAGTTGTGCAACAATGGAACAAGGCTTTGGCTATTTCTTGTTTGGTGGCAATTTTTCTAGATCCATTATTTTTCTTCCTACTGAATGCGCGGGAGGATTTGAAATGTATTGTTATCAACTGGCCAATGACAGCTACACTTGTTTTGTTTAGAAGCTTGAATGATGCCATATATTTCTTGAACATTCTTCTTCAGTTTAGGTTGGCTTATGTTTCTCCCGAGTCAACAGTGGTTGGTGCCGGAGATTTAGTTGACCATCCAAAGAAAATTGCTTTACATTACCTATGGGGCTATTTTTTGCTTGATTTATTTATTGTGATTCCCCTTCCTCAGATAATGCTTTATTTCATTATACCAACCTACTTGGGTTTCTCAGGGGCAAATTATGCTAAGAATCTTCTGCGTGCAGCTATCCTTGCGCAATACATGCCTAGACTATTCAGGTTTCTGCCTTTGCTGATTGGCCAGTCTCCAACAGGATTCATATTTGAGTCCGCATGGGGGAATTTTATTATAAATCTTCTTATTTTTATGCTATCGGGACACGTTGTTGGCTCTTGCTGGTACCTCTTTGGCCTACAAAGGGTTAATCAATGTTTTCGAAACGCCTGCTCTAATTCTACTCTTCCTGGATGCAAGAATTACATTGATTGTGGCCTGTCTACCGACACACCAATTGAGTGGCATAATAATGAAAATGCCACTAATTGTTTGAACTCCAGTTCTGGTGTTTTTGAATATGGGATTTATGCCAATGCTGTAAGACTTACCACAGAAACTAATGTGGTCAAGAAATATGTGTATGCTCTGTTTTGGGGTTTCCAGGAGATTAGAAATGCAACTTAG 1434 0.4121 MASFEKDEEPMLLETRGLRSDEHVDSNFRRLVTRTRSASMSIPMVSMESSDREATFVGHTGPLRTVRKIPFPQMSGPLYPTQGTGNSLQRSRVVAGNNVGESRIERFRNTGESHWNNNNDRKNEHLLRSGQLGMCNDPYCTTCPANFKAAQQGNSRTSYRRDPVFHNVLYGDAKGFARKVYSFFSSHVPGVMNPHNKVVQQWNKALAISCLVAIFLDPLFFFLLNAREDLKCIVINWPMTATLVLFRSLNDAIYFLNILLQFRLAYVSPESTVVGAGDLVDHPKKIALHYLWGYFLLDLFIVIPLPQIMLYFIIPTYLGFSGANYAKNLLRAAILAQYMPRLFRFLPLLIGQSPTGFIFESAWGNFIINLLIFMLSGHVVGSCWYLFGLQRVNQCFRNACSNSTLPGCKNYIDCGLSTDTPIEWHNNENATNCLNSSSGVFEYGIYANAVRLTTETNVVKKYVYALFWGFQEIRNAT* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4413 477 SUPERFAMILY Voltage-gated potassium channels 194 471 - -
Amo05g4413 477 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 473 - -
Amo05g4413 477 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 473 - -
Amo05g4413 477 Pfam Ion transport protein 203 471 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4413 Amo-Chr5 114904932 114913582 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4413 1 473 Ion Channels AT3G17700 55.372 2.41e-175 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4413 K05391 - ccaj:109789004 689.878