Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4408 TGTGTTCAGTTCAGACTTCAATTCCTCTTTAACTGGAAAGGAACCATGGCTAGTCTTAAAAATGATGAGCTGCCAATGCTGTTGAGAAAGGAATCAAAGGATGAAGAACAATATGATGAGACCCTGAATTCCAAATTGCAGAGATTCTTATCCAGGACACAAAGTTCAATTGCAATTCCTATGAGCACCCTGGAGTCATATGATAGCGAAACTAGTCTTGTTGGACATACTGGTCCACTGAAGAGTGAGAGAAAAACCCCCTTTCCACAAATGAGCGGTCCACTATATGCTACCGGAACTGTCAGTCATTTACAGCAGAGGATGGTTGGTACAGGAAGAAAAGAAGATGAAAGAAAGACAGAAAAATTTGATGCTTTCCGTGGCACCGGTTCGAATAACTGGCATAATAACCATGATAAGGAAAATGAACACTTAATGAGGTCTGGACAACTTGGAATGTGTGATGATCCTTATTGCACTTCTTGCCCAACATACTTCAAGCCTTCTCAACATAAAGTTTCAAAATCTTCGACAATATTTGATCCCAAGTTCCACAATGCTCTCTATGGGGACGCCAAGGGATTTGCAACAAAGTTTTATTCCCTTTGTTGTTCGTACATTCCTGGAGTTATAAATCCTCACACTAAAGTCATACAACAATGGAACAAGATTTTGGCCATTTTTTGCTTGGTTGCTATTTTTGTGGATCCATTATTTTTCTTTGTATTTTATGCACGAGAGGATCATAATTGTATTGTTGTCGACTGGTCAATGACAACAACACTTGTTATTGTTCGAAGCTTGAATGATTTGGTATATTTCTTTAACATTCTTCTCCAGTTCAAATTGGCTTATGTTTCTCCTGAGTCAAGGGTGGTTGGTACTGGAGATTTAGAGGACCATCCGAAGAAAATCGCACTTCATTACCTTCGGGGTTATTTTTTTCTTGACTTATTTGTTGTATTTCCTCTTCCTCAGTCATTTTGTAACCATACTCCTTTCCATGACATATATAGTGAAATATGTGCAGATAATGATATTGTTTGTCTGCCAAAATCCCTTGGGGGAGCAAATTATGCTAAGAATCTTCTGCGTGCAGCGATCCTTGTGCAGTACATCCCCAGATTGTTTAGATTTCTGCCTATGCTAATTGGCCAGTCTCCATCAGGATTTATATTTGAGTCAGCCTGGGCAAATTTTATAATAAACCTTCTAATTTTTATGCTATCTGGACATGTTGTTGGCTCTTGCTGGTACCTCTTTGGTCTCAGGGTTAACCAATGTTTGCGAGATGCCTGCCACAATTCTAAGATCCCCGGATGCATGACATTCATTGATTGTGGGCATGGTCATGATGGAGTCTTTCAGCCTGACCAAACATCAAATCAGTGGAACAACAATACTGATGCTGTTGCTTGCTTGAATCCCCCATCTGATGGTGGTTTTGCTTATGGGATATATCAAAATGTTGTACCTCTTACTACAGAAACTAATGTGATCAACAAATACATCTATTCTTTGTTTTGGGGATTCCAGCAAATCAGTACTTTGGCTGGTAATCTAGTCCCTAGCACTTTTGTGTGGGAAGTCCTTTTCACTATGGCCATTATAGGATCTGGACTCTTGCTTTTTGCTATTCTCATTGGTAACATACAGAATTTTCTTCAAGCTCTTGGGCGGAGGAGGCTAGAAATGCAACTCAGGGGACGTGATGTGGAGCAATGGATGAGCCATCGACGCTTACCAGAAAATCTAAGAAGGAGAGTACGACAGGCTGAACGTTATTCTTGGGCTGCAACAAGGGGAGTGAACGAAGAAATGCTTATGGAAAATTTACCAGAAGATCTACAGAGAGACATAAGGCGTCATCTCTTCAAATTTATTAAGAAAGTTCGAATTTTTGCTTTGATGGATGAACCTATCCTAGATGCCATTTGTGAGAGATTAAGACAAAGGACATACATAAAAGGAAGTATTATATTGAGTATGGGTTGTCTGGTAGATAAGATGGTATTCGTGGTGCGAGGAAAGCTCGAGAGTGTCGGAGAAGATGGAATAAGACTTCCGTTATCCGAAGGGGATGCCTGTGGCGAAGAACTTCTAACATGGTATTTAGAACATTCTTCTGTCAGTACAGATGGTAGAAAAGTAAGGCTTCCTGGACAAAGGTTGCTTAGCAACAGAACAGTGAGGTGCTTAACAAATGTAGAGTCATTTTCGCTCCGCGCCGCAGATCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGTCCGCGTGTTCAAGGAGCCTTAAGGTATGAATCACCTTATTGGAGATCCTTAGCTGCAATTCGTATTCAAGTTGCATGGAGATACAGGAAGAAACGTCTAAGTCGTGCTGATTCTGCTGTTTAA 2400 0.4046 CVQFRLQFLFNWKGTMASLKNDELPMLLRKESKDEEQYDETLNSKLQRFLSRTQSSIAIPMSTLESYDSETSLVGHTGPLKSERKTPFPQMSGPLYATGTVSHLQQRMVGTGRKEDERKTEKFDAFRGTGSNNWHNNHDKENEHLMRSGQLGMCDDPYCTSCPTYFKPSQHKVSKSSTIFDPKFHNALYGDAKGFATKFYSLCCSYIPGVINPHTKVIQQWNKILAIFCLVAIFVDPLFFFVFYAREDHNCIVVDWSMTTTLVIVRSLNDLVYFFNILLQFKLAYVSPESRVVGTGDLEDHPKKIALHYLRGYFFLDLFVVFPLPQSFCNHTPFHDIYSEICADNDIVCLPKSLGGANYAKNLLRAAILVQYIPRLFRFLPMLIGQSPSGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLRVNQCLRDACHNSKIPGCMTFIDCGHGHDGVFQPDQTSNQWNNNTDAVACLNPPSDGGFAYGIYQNVVPLTTETNVINKYIYSLFWGFQQISTLAGNLVPSTFVWEVLFTMAIIGSGLLLFAILIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPENLRRRVRQAERYSWAATRGVNEEMLMENLPEDLQRDIRRHLFKFIKKVRIFALMDEPILDAICERLRQRTYIKGSIILSMGCLVDKMVFVVRGKLESVGEDGIRLPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLLSNRTVRCLTNVESFSLRAADLEEVTILFTRFLRSPRVQGALRYESPYWRSLAAIRIQVAWRYRKKRLSRADSAV* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4408 799 Pfam Ion transport protein 223 561 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo05g4408 799 PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL PROTEIN 46 795 - -
Amo05g4408 799 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 46 795 - -
Amo05g4408 799 CDD CAP_ED 633 749 IPR000595 -
Amo05g4408 799 Gene3D Jelly Rolls 631 755 IPR014710 -
Amo05g4408 799 SUPERFAMILY Voltage-gated potassium channels 213 561 - -
Amo05g4408 799 Gene3D - 223 558 - -
Amo05g4408 799 SUPERFAMILY cAMP-binding domain-like 561 750 IPR018490 -
Amo05g4408 799 Gene3D Helix hairpin bin 560 625 - -
Amo05g4408 799 ProSiteProfiles cAMP/cGMP binding motif profile. 633 701 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4408 Amo-Chr5 114860049 114867405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4408 20 711 Ion Channels AT3G17700 56.534 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4408 K05391 - gmx:100795427 1200.27